miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 109 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 200337 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 103140 0.66 0.813732
Target:  5'- -gGCGGugCUgCAGCAC-CagGCGGAUc -3'
miRNA:   3'- caUGCCugGAgGUCGUGcGg-CGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 82621 0.66 0.813732
Target:  5'- ---aGGAgCUCCAuaCACGCCGcCGGAg -3'
miRNA:   3'- caugCCUgGAGGUc-GUGCGGC-GCCUa -5'
14520 5' -60.3 NC_003521.1 + 76205 0.66 0.80538
Target:  5'- -gAUGGGCCagaagcccgCCGGCACGCCcUGGGc -3'
miRNA:   3'- caUGCCUGGa--------GGUCGUGCGGcGCCUa -5'
14520 5' -60.3 NC_003521.1 + 71005 0.66 0.80538
Target:  5'- cGUACGGACUgacgCUGGCugGagaCCGgCGGAg -3'
miRNA:   3'- -CAUGCCUGGa---GGUCGugC---GGC-GCCUa -5'
14520 5' -60.3 NC_003521.1 + 128768 0.66 0.80538
Target:  5'- -cGCGGcguCCUCCAGCagGCGUCGCa--- -3'
miRNA:   3'- caUGCCu--GGAGGUCG--UGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 145576 0.66 0.80538
Target:  5'- --cCGGACCUCCccGGCu--CUGCGGAUg -3'
miRNA:   3'- cauGCCUGGAGG--UCGugcGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 165935 0.66 0.796887
Target:  5'- gGUACuuGACCUCCAGguCGgggugcUCGCGGAa -3'
miRNA:   3'- -CAUGc-CUGGAGGUCguGC------GGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 73922 0.66 0.796887
Target:  5'- cUGCGGcaguucACCUacCCcGCGCGCCcGCGGAc -3'
miRNA:   3'- cAUGCC------UGGA--GGuCGUGCGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 172535 0.66 0.796887
Target:  5'- -gAUGGccuCCUCCAGCACcugguggauGCUGgGGAUg -3'
miRNA:   3'- caUGCCu--GGAGGUCGUG---------CGGCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 115785 0.66 0.796887
Target:  5'- -cACGGACCa-CAcGCGCGgauacCCGCGGAUg -3'
miRNA:   3'- caUGCCUGGagGU-CGUGC-----GGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 107445 0.66 0.796887
Target:  5'- -cGCGGACCgCC-GCGCuguGCCgGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGuCGUG---CGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 10540 0.66 0.79603
Target:  5'- aGUAUGGACUgCUAGUggugcugACGUCGUGGGUg -3'
miRNA:   3'- -CAUGCCUGGaGGUCG-------UGCGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 82749 0.66 0.79603
Target:  5'- uUGCGGgacgagaucacgcGCgaCCGGCGgGCCGUGGAg -3'
miRNA:   3'- cAUGCC-------------UGgaGGUCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 200412 0.66 0.788259
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 184 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 240733 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 207899 0.66 0.788258
Target:  5'- --uUGGGCuCUCCGGCcgccaccuACGCCGgGGGc -3'
miRNA:   3'- cauGCCUG-GAGGUCG--------UGCGGCgCCUa -5'
14520 5' -60.3 NC_003521.1 + 28311 0.67 0.779504
Target:  5'- -aGCGGcagcgACC-CCGGCGCgGCCuGCGGAc -3'
miRNA:   3'- caUGCC-----UGGaGGUCGUG-CGG-CGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.