miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14527 3' -51.9 NC_003521.1 + 71398 0.66 0.99623
Target:  5'- cGAGGac-CGCCUGcUGGCcuacGGCGUGCUg -3'
miRNA:   3'- cUUCCgauGUGGAC-ACUG----UUGCACGA- -5'
14527 3' -51.9 NC_003521.1 + 150627 0.66 0.99623
Target:  5'- cGgcGGCUGCugCgcagGcGGgGGCGUGCg -3'
miRNA:   3'- -CuuCCGAUGugGa---CaCUgUUGCACGa -5'
14527 3' -51.9 NC_003521.1 + 214624 0.66 0.99623
Target:  5'- --uGGCcggAUACCUGUGcuGCAGCGagcgGCUg -3'
miRNA:   3'- cuuCCGa--UGUGGACAC--UGUUGCa---CGA- -5'
14527 3' -51.9 NC_003521.1 + 86340 0.66 0.99623
Target:  5'- uGGAGGUcuugccgGCGCCggcgGUGccggugaccaACAGCGUGCg -3'
miRNA:   3'- -CUUCCGa------UGUGGa---CAC----------UGUUGCACGa -5'
14527 3' -51.9 NC_003521.1 + 123160 0.66 0.99623
Target:  5'- -uGGuGCUGCugCUgagGUGGCGGCGgcgGCg -3'
miRNA:   3'- cuUC-CGAUGugGA---CACUGUUGCa--CGa -5'
14527 3' -51.9 NC_003521.1 + 44273 0.66 0.995599
Target:  5'- cGGAGGagaucagcgUGCACCUGggcgccGACGACGUGaCg -3'
miRNA:   3'- -CUUCCg--------AUGUGGACa-----CUGUUGCAC-Ga -5'
14527 3' -51.9 NC_003521.1 + 85397 0.66 0.995599
Target:  5'- --cGGCUGCGCUUGgccGGCAGCaggccuccgGUGCc -3'
miRNA:   3'- cuuCCGAUGUGGACa--CUGUUG---------CACGa -5'
14527 3' -51.9 NC_003521.1 + 147706 0.66 0.995599
Target:  5'- --cGGCcaGCACCaUGUGACc-CGUGCg -3'
miRNA:   3'- cuuCCGa-UGUGG-ACACUGuuGCACGa -5'
14527 3' -51.9 NC_003521.1 + 97189 0.66 0.995599
Target:  5'- gGAAGcGCcggUGCACC-GUGACGuUGUGCa -3'
miRNA:   3'- -CUUC-CG---AUGUGGaCACUGUuGCACGa -5'
14527 3' -51.9 NC_003521.1 + 215143 0.66 0.995599
Target:  5'- aGggGGCuUGCAUCgUGgccGACAACcUGCUg -3'
miRNA:   3'- -CuuCCG-AUGUGG-ACa--CUGUUGcACGA- -5'
14527 3' -51.9 NC_003521.1 + 161602 0.66 0.995599
Target:  5'- ---cGCggGCAUCUGgugcccucgGGCAACGUGCUg -3'
miRNA:   3'- cuucCGa-UGUGGACa--------CUGUUGCACGA- -5'
14527 3' -51.9 NC_003521.1 + 141952 0.66 0.994885
Target:  5'- -uGGGCgccCACCUGcugGGCGACGaGCg -3'
miRNA:   3'- cuUCCGau-GUGGACa--CUGUUGCaCGa -5'
14527 3' -51.9 NC_003521.1 + 18880 0.66 0.994885
Target:  5'- --cGGCgacCGCCUG-GACGuguCGUGCa -3'
miRNA:   3'- cuuCCGau-GUGGACaCUGUu--GCACGa -5'
14527 3' -51.9 NC_003521.1 + 80471 0.66 0.994885
Target:  5'- gGAAGGCggcgACGCCcucGACGACGgagGCc -3'
miRNA:   3'- -CUUCCGa---UGUGGacaCUGUUGCa--CGa -5'
14527 3' -51.9 NC_003521.1 + 40671 0.66 0.99408
Target:  5'- gGAGGGCaa-ACgaUGUgGGCGGCGUGCUg -3'
miRNA:   3'- -CUUCCGaugUGg-ACA-CUGUUGCACGA- -5'
14527 3' -51.9 NC_003521.1 + 135236 0.66 0.99408
Target:  5'- --cGGCUGCGCCggcgGcGGCGACGacacgGCg -3'
miRNA:   3'- cuuCCGAUGUGGa---CaCUGUUGCa----CGa -5'
14527 3' -51.9 NC_003521.1 + 18292 0.66 0.99408
Target:  5'- -uGGGCUACuACCUGgccuaugGACccuuCGUGCc -3'
miRNA:   3'- cuUCCGAUG-UGGACa------CUGuu--GCACGa -5'
14527 3' -51.9 NC_003521.1 + 349 0.66 0.99408
Target:  5'- gGAGGGCaa-ACgaUGUgGGCGGCGUGCUg -3'
miRNA:   3'- -CUUCCGaugUGg-ACA-CUGUUGCACGA- -5'
14527 3' -51.9 NC_003521.1 + 199969 0.66 0.993175
Target:  5'- --cGGCU-CACC-GUGACGuUGUGCa -3'
miRNA:   3'- cuuCCGAuGUGGaCACUGUuGCACGa -5'
14527 3' -51.9 NC_003521.1 + 121484 0.66 0.993175
Target:  5'- uGGAGGCcggACcCCUGcccGACcGCGUGCg -3'
miRNA:   3'- -CUUCCGa--UGuGGACa--CUGuUGCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.