miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14527 5' -58.5 NC_003521.1 + 219511 0.65 0.92684
Target:  5'- gUCAGCuggaaguugacgauGACCGCCAcgCGCAgCCAgaCCg -3'
miRNA:   3'- -GGUCG--------------CUGGCGGUa-GCGUaGGUggGG- -5'
14527 5' -58.5 NC_003521.1 + 160536 0.65 0.926337
Target:  5'- aCCAGCacgucgGACgCGCCGUCGUcuucgaaccaagcUCCGCCUUc -3'
miRNA:   3'- -GGUCG------CUG-GCGGUAGCGu------------AGGUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 44052 0.66 0.923276
Target:  5'- aCC-GCGcCCGCgGUCGCG-CCGgCCg -3'
miRNA:   3'- -GGuCGCuGGCGgUAGCGUaGGUgGGg -5'
14527 5' -58.5 NC_003521.1 + 195862 0.66 0.923276
Target:  5'- uUCGGgGAUCGCgGU-GUcgCCGCCCUu -3'
miRNA:   3'- -GGUCgCUGGCGgUAgCGuaGGUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 182037 0.66 0.923276
Target:  5'- uCUAuGCGucgUCGCCGgcgCGCG-CCGCCCUg -3'
miRNA:   3'- -GGU-CGCu--GGCGGUa--GCGUaGGUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 2166 0.66 0.923276
Target:  5'- gCAGCaACUGCaacaGUUGCAgcaaCCGCCCg -3'
miRNA:   3'- gGUCGcUGGCGg---UAGCGUa---GGUGGGg -5'
14527 5' -58.5 NC_003521.1 + 7191 0.66 0.923276
Target:  5'- aCGGCG-CCGCCGcugaaaUUGCccucGagCACCCCg -3'
miRNA:   3'- gGUCGCuGGCGGU------AGCG----UagGUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 142436 0.66 0.923276
Target:  5'- gCAGCG-CCGCCGaagccUCGgGcgCCACUUCg -3'
miRNA:   3'- gGUCGCuGGCGGU-----AGCgUa-GGUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 156910 0.66 0.923276
Target:  5'- -gGGCGACgGgCCGgagcgggggacuUCGCG-CCACCCg -3'
miRNA:   3'- ggUCGCUGgC-GGU------------AGCGUaGGUGGGg -5'
14527 5' -58.5 NC_003521.1 + 39532 0.66 0.923276
Target:  5'- gCGGCGAgaGCUggCGCAggucggUgGCCCCg -3'
miRNA:   3'- gGUCGCUggCGGuaGCGUa-----GgUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 135060 0.66 0.923276
Target:  5'- uCgGGC-ACCaCCGUCuGCAUCUcCCCCa -3'
miRNA:   3'- -GgUCGcUGGcGGUAG-CGUAGGuGGGG- -5'
14527 5' -58.5 NC_003521.1 + 59104 0.66 0.923275
Target:  5'- gCCAGCGugCGC----GCGUCCAUCa- -3'
miRNA:   3'- -GGUCGCugGCGguagCGUAGGUGGgg -5'
14527 5' -58.5 NC_003521.1 + 115401 0.66 0.923275
Target:  5'- gCgGGCGGCCGCCAcgGCcUCCGgaCUCa -3'
miRNA:   3'- -GgUCGCUGGCGGUagCGuAGGUg-GGG- -5'
14527 5' -58.5 NC_003521.1 + 137698 0.66 0.923275
Target:  5'- gCAGC-ACCGCCG-CGCG-CUGCgCCa -3'
miRNA:   3'- gGUCGcUGGCGGUaGCGUaGGUGgGG- -5'
14527 5' -58.5 NC_003521.1 + 224099 0.66 0.923275
Target:  5'- gCCGGCGgucgccgaacucGCCGCgCAUCacgcGCGUCUGCCa- -3'
miRNA:   3'- -GGUCGC------------UGGCG-GUAG----CGUAGGUGGgg -5'
14527 5' -58.5 NC_003521.1 + 57015 0.66 0.923275
Target:  5'- aCGGaCG-CCGCCA-CGCGgaugaacacgCCGCCCa -3'
miRNA:   3'- gGUC-GCuGGCGGUaGCGUa---------GGUGGGg -5'
14527 5' -58.5 NC_003521.1 + 63071 0.66 0.923275
Target:  5'- aCC-GCGACCccguacagcugcGCCGgcgCGCugcCCGCCCUc -3'
miRNA:   3'- -GGuCGCUGG------------CGGUa--GCGua-GGUGGGG- -5'
14527 5' -58.5 NC_003521.1 + 202394 0.66 0.923275
Target:  5'- gCAGCaACUGCaacaGUUGCAgcaaCCGCCCg -3'
miRNA:   3'- gGUCGcUGGCGg---UAGCGUa---GGUGGGg -5'
14527 5' -58.5 NC_003521.1 + 100287 0.66 0.923275
Target:  5'- gCAGCcACCGCCuUUGUGgagCCGCgCCu -3'
miRNA:   3'- gGUCGcUGGCGGuAGCGUa--GGUGgGG- -5'
14527 5' -58.5 NC_003521.1 + 93020 0.66 0.923275
Target:  5'- -uGGCGucuaGCCGCCGUagcCGCAcCCucaaaaaagaACCCCg -3'
miRNA:   3'- ggUCGC----UGGCGGUA---GCGUaGG----------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.