miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14529 5' -57.6 NC_003521.1 + 74084 0.66 0.944704
Target:  5'- uGGCGGGCGAGGucuuccccgccaAGGAugauagcuGGCugugGCCGCu -3'
miRNA:   3'- -CCGCUUGCUCCuuc---------UCCU--------CCG----CGGCG- -5'
14529 5' -57.6 NC_003521.1 + 58072 0.66 0.942994
Target:  5'- cGGCGAA-GAGGGcagcAGAGGAGaGUcCuCGCc -3'
miRNA:   3'- -CCGCUUgCUCCU----UCUCCUC-CGcG-GCG- -5'
14529 5' -57.6 NC_003521.1 + 235696 0.66 0.942994
Target:  5'- -cCGAAgaaGAGGAAcAGGGGGCGuaGCc -3'
miRNA:   3'- ccGCUUg--CUCCUUcUCCUCCGCggCG- -5'
14529 5' -57.6 NC_003521.1 + 48955 0.66 0.942994
Target:  5'- cGGUgcaGGugGAGGAAGAGGuGGaCGaacaCGa -3'
miRNA:   3'- -CCG---CUugCUCCUUCUCCuCC-GCg---GCg -5'
14529 5' -57.6 NC_003521.1 + 192436 0.66 0.942994
Target:  5'- gGGa-GACGAaGGAGAGGGgcauggcggcGGCGCCGg -3'
miRNA:   3'- -CCgcUUGCUcCUUCUCCU----------CCGCGGCg -5'
14529 5' -57.6 NC_003521.1 + 47405 0.66 0.94169
Target:  5'- cGCGAGCGGagcuGGAuguagcaucgcucgGGccAGGgcacaugcagccGGGCGCCGCa -3'
miRNA:   3'- cCGCUUGCU----CCU--------------UC--UCC------------UCCGCGGCG- -5'
14529 5' -57.6 NC_003521.1 + 198512 0.66 0.940367
Target:  5'- gGGgGAGCGGGGccaaaaacAGGGGGAuGCguaccgucugcgaggGCCGCu -3'
miRNA:   3'- -CCgCUUGCUCC--------UUCUCCUcCG---------------CGGCG- -5'
14529 5' -57.6 NC_003521.1 + 86544 0.66 0.939921
Target:  5'- gGGCaGAGCGuuGGAgcAGAccuucugccagaacuGGAGGCagggcacGCCGCa -3'
miRNA:   3'- -CCG-CUUGCu-CCU--UCU---------------CCUCCG-------CGGCG- -5'
14529 5' -57.6 NC_003521.1 + 181497 0.66 0.938572
Target:  5'- cGGUGAAgGAccaggguacGGAGGAGaAGGUGUgCGCg -3'
miRNA:   3'- -CCGCUUgCU---------CCUUCUCcUCCGCG-GCG- -5'
14529 5' -57.6 NC_003521.1 + 207671 0.66 0.938572
Target:  5'- gGGCaucGCGAGGGAGAuGAcGGCGagcccuaCGCg -3'
miRNA:   3'- -CCGcu-UGCUCCUUCUcCU-CCGCg------GCG- -5'
14529 5' -57.6 NC_003521.1 + 178393 0.66 0.938572
Target:  5'- cGGCGGgcucagACGAGGAGauuGGGGUGCgUGCa -3'
miRNA:   3'- -CCGCU------UGCUCCUUcucCUCCGCG-GCG- -5'
14529 5' -57.6 NC_003521.1 + 167692 0.66 0.938572
Target:  5'- cGGUGAcgACGcucguGGAGGAGGcGGCGguaGCa -3'
miRNA:   3'- -CCGCU--UGCu----CCUUCUCCuCCGCgg-CG- -5'
14529 5' -57.6 NC_003521.1 + 123217 0.66 0.938572
Target:  5'- gGGUaGGACGGGGgcGGcGGuAGGUggucguagcGCCGCg -3'
miRNA:   3'- -CCG-CUUGCUCCuuCU-CC-UCCG---------CGGCG- -5'
14529 5' -57.6 NC_003521.1 + 196886 0.66 0.938572
Target:  5'- cGCGggUGAGGccGGGGcggaaggcGGGuCGUCGUu -3'
miRNA:   3'- cCGCuuGCUCCuuCUCC--------UCC-GCGGCG- -5'
14529 5' -57.6 NC_003521.1 + 6414 0.66 0.938572
Target:  5'- aGGCGGaaGCucGGAGuauucGGGGGGCcGCUGCg -3'
miRNA:   3'- -CCGCU--UGcuCCUUc----UCCUCCG-CGGCG- -5'
14529 5' -57.6 NC_003521.1 + 155582 0.66 0.938118
Target:  5'- aGGUGGugcagcagcaACGAGaGcagcagcAGGAGGuGGCGaCCGCu -3'
miRNA:   3'- -CCGCU----------UGCUC-C-------UUCUCCuCCGC-GGCG- -5'
14529 5' -57.6 NC_003521.1 + 43657 0.66 0.933936
Target:  5'- cGGaGAGCagaGAGGAggAGAGGAGGaGCaGCa -3'
miRNA:   3'- -CCgCUUG---CUCCU--UCUCCUCCgCGgCG- -5'
14529 5' -57.6 NC_003521.1 + 18148 0.66 0.933936
Target:  5'- aGGuCGAGcCGcugcucaugcuGGGcAGcguGGAGGCGCUGCg -3'
miRNA:   3'- -CC-GCUU-GC-----------UCCuUCu--CCUCCGCGGCG- -5'
14529 5' -57.6 NC_003521.1 + 78188 0.66 0.933936
Target:  5'- uGGCGaAACGGcGuGcGGAGcGGGCGCgGCg -3'
miRNA:   3'- -CCGC-UUGCU-C-CuUCUCcUCCGCGgCG- -5'
14529 5' -57.6 NC_003521.1 + 60121 0.66 0.933936
Target:  5'- uGGUGAcGCGAcugcuGAGcGAGGAGGUGUCGa -3'
miRNA:   3'- -CCGCU-UGCUc----CUU-CUCCUCCGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.