miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1453 3' -60 NC_001335.1 + 28029 0.66 0.428446
Target:  5'- uCUACuucgACgGCCaGGAGUUGCCCUGGu -3'
miRNA:   3'- uGAUG----UGgUGGgUCUCGACGGGGCCu -5'
1453 3' -60 NC_001335.1 + 796 0.67 0.404468
Target:  5'- aGCUGCGCCGCcuucggcauguucguCCAGAgGCUGaaaUCCGGc -3'
miRNA:   3'- -UGAUGUGGUG---------------GGUCU-CGACg--GGGCCu -5'
1453 3' -60 NC_001335.1 + 47371 0.67 0.391912
Target:  5'- cGCUACAgCGgUCGGAGCgaugGCCuuGGc -3'
miRNA:   3'- -UGAUGUgGUgGGUCUCGa---CGGggCCu -5'
1453 3' -60 NC_001335.1 + 27184 0.67 0.3831
Target:  5'- gACUACACC-CCCAGc---GUCCCGGu -3'
miRNA:   3'- -UGAUGUGGuGGGUCucgaCGGGGCCu -5'
1453 3' -60 NC_001335.1 + 6220 0.67 0.370987
Target:  5'- --cACACCGacgaguggauucaCCAGGucGCUGCCUCGGAc -3'
miRNA:   3'- ugaUGUGGUg------------GGUCU--CGACGGGGCCU- -5'
1453 3' -60 NC_001335.1 + 30231 0.67 0.357468
Target:  5'- cACcgGCACCACCCAG-GCUucGUCCUGa- -3'
miRNA:   3'- -UGa-UGUGGUGGGUCuCGA--CGGGGCcu -5'
1453 3' -60 NC_001335.1 + 14864 0.68 0.349195
Target:  5'- aACUugACAgCCACCC--GGCUGucuaCCCCGGAg -3'
miRNA:   3'- -UGA--UGU-GGUGGGucUCGAC----GGGGCCU- -5'
1453 3' -60 NC_001335.1 + 32555 0.68 0.331479
Target:  5'- cGCUucuCGCCACCaggcgcuuccuGAGCUGCCUgCGGGg -3'
miRNA:   3'- -UGAu--GUGGUGGgu---------CUCGACGGG-GCCU- -5'
1453 3' -60 NC_001335.1 + 22325 0.68 0.316718
Target:  5'- cGCUggGCAUCACCCcggagggGGAGCUGaucgaCCGGAu -3'
miRNA:   3'- -UGA--UGUGGUGGG-------UCUCGACgg---GGCCU- -5'
1453 3' -60 NC_001335.1 + 22031 0.68 0.309901
Target:  5'- --aGCACCugCUgaAGCUGCCuCUGGAg -3'
miRNA:   3'- ugaUGUGGugGGucUCGACGG-GGCCU- -5'
1453 3' -60 NC_001335.1 + 32979 0.71 0.218036
Target:  5'- --aGCACCGCCCcugcccagcccGAGCcgGCCCCGGc -3'
miRNA:   3'- ugaUGUGGUGGGu----------CUCGa-CGGGGCCu -5'
1453 3' -60 NC_001335.1 + 6634 0.79 0.053568
Target:  5'- ---cCACCACCCGGAGCuUGCCCCGu- -3'
miRNA:   3'- ugauGUGGUGGGUCUCG-ACGGGGCcu -5'
1453 3' -60 NC_001335.1 + 10056 1.08 0.000343
Target:  5'- cACUACACCACCCAGAGCUGCCCCGGAa -3'
miRNA:   3'- -UGAUGUGGUGGGUCUCGACGGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.