miRNA display CGI


Results 21 - 40 of 428 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 3' -56.6 NC_003521.1 + 14454 0.66 0.952689
Target:  5'- -uGCGGCGG-CGUCAGCcGCCGcucCCGCGg -3'
miRNA:   3'- gcUGUUGCCaGCGGUCG-UGGU---GGUGU- -5'
14534 3' -56.6 NC_003521.1 + 216189 0.66 0.952689
Target:  5'- gGACGAaGG-CGCUgAGCACCGgCGCGg -3'
miRNA:   3'- gCUGUUgCCaGCGG-UCGUGGUgGUGU- -5'
14534 3' -56.6 NC_003521.1 + 198211 0.66 0.952689
Target:  5'- gCGGCGACGGcgcCGCCGGCG--GCCGu- -3'
miRNA:   3'- -GCUGUUGCCa--GCGGUCGUggUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 56729 0.66 0.952689
Target:  5'- uCGuucauCAGCGGUccgagCGCCAuGguCCACUACAg -3'
miRNA:   3'- -GCu----GUUGCCA-----GCGGU-CguGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 15704 0.66 0.952689
Target:  5'- uCGACcagguGCuGUCGCuCGGCAUC-CCGCAc -3'
miRNA:   3'- -GCUGu----UGcCAGCG-GUCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 156910 0.66 0.951517
Target:  5'- gGGCGACGG--GCCGgagcgggggacuucGCGCCACcCGCAg -3'
miRNA:   3'- gCUGUUGCCagCGGU--------------CGUGGUG-GUGU- -5'
14534 3' -56.6 NC_003521.1 + 223341 0.66 0.951517
Target:  5'- cCGGCGGCGccgcuaccggugccGUCGUCucuccuccgAGCGCUGCCGCGg -3'
miRNA:   3'- -GCUGUUGC--------------CAGCGG---------UCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 65711 0.66 0.948708
Target:  5'- gGACAGCGG-CGCCgcGGCgGCCcugGCCgGCAa -3'
miRNA:   3'- gCUGUUGCCaGCGG--UCG-UGG---UGG-UGU- -5'
14534 3' -56.6 NC_003521.1 + 25548 0.66 0.948708
Target:  5'- gCGACGGCGGaCGCUguuguGCagGCgGCCGCGg -3'
miRNA:   3'- -GCUGUUGCCaGCGGu----CG--UGgUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 60325 0.66 0.948708
Target:  5'- aGACGGCGcugaugcaGCCGGCcaACCugCGCAg -3'
miRNA:   3'- gCUGUUGCcag-----CGGUCG--UGGugGUGU- -5'
14534 3' -56.6 NC_003521.1 + 187377 0.66 0.948708
Target:  5'- cCGACGACGGUgaGCagCGGCaacaGCCuCCGCAc -3'
miRNA:   3'- -GCUGUUGCCAg-CG--GUCG----UGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 14161 0.66 0.948708
Target:  5'- aGAgGACGaGaucaUCGUCAGCGCCaagaagGCCGCGa -3'
miRNA:   3'- gCUgUUGC-C----AGCGGUCGUGG------UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 226896 0.66 0.948708
Target:  5'- gGGCAccACGG-CgGCCAGCGCgGCCuccGCGg -3'
miRNA:   3'- gCUGU--UGCCaG-CGGUCGUGgUGG---UGU- -5'
14534 3' -56.6 NC_003521.1 + 105072 0.66 0.948708
Target:  5'- gGGCGAUcccacCGCCGcCACCACCGCAg -3'
miRNA:   3'- gCUGUUGcca--GCGGUcGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 57984 0.66 0.948708
Target:  5'- -cGCuGCuGUUGUCAGCGCCGCCGa- -3'
miRNA:   3'- gcUGuUGcCAGCGGUCGUGGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 25886 0.66 0.948708
Target:  5'- gGACGAUGGUCuGCCcGCuguacauguuCCGCCAg- -3'
miRNA:   3'- gCUGUUGCCAG-CGGuCGu---------GGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 182398 0.66 0.948708
Target:  5'- cCGGCAgcgcuGCGGcuUCGUCA--ACCGCCGCAu -3'
miRNA:   3'- -GCUGU-----UGCC--AGCGGUcgUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 18478 0.66 0.948708
Target:  5'- gCGGCGAguGUCGCCuggaggAGCugcccguguGCCACCACAc -3'
miRNA:   3'- -GCUGUUgcCAGCGG------UCG---------UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 102352 0.66 0.948708
Target:  5'- gGGCGGCaGGUgGCagauguGGCGCCGCCGg- -3'
miRNA:   3'- gCUGUUG-CCAgCGg-----UCGUGGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 98518 0.66 0.948708
Target:  5'- gCGACGACG--CGCgCGGCuggGCCGCUGCAg -3'
miRNA:   3'- -GCUGUUGCcaGCG-GUCG---UGGUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.