miRNA display CGI


Results 21 - 40 of 651 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 5' -61.7 NC_003521.1 + 182049 0.66 0.791406
Target:  5'- --cGCcGGCGcGCGCCGCCcugcaGUGGCUGg -3'
miRNA:   3'- ccaCGaUCGU-CGCGGUGG-----CGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 184904 0.66 0.791406
Target:  5'- --cGCUGGCAcccccguuGcCGCCGCCGuCGGagggucggcgaCCGCg -3'
miRNA:   3'- ccaCGAUCGU--------C-GCGGUGGC-GCC-----------GGCG- -5'
14534 5' -61.7 NC_003521.1 + 85197 0.66 0.790554
Target:  5'- -cUGCUAcCAcCGCCGCCgagaacaGCGGUCGCc -3'
miRNA:   3'- ccACGAUcGUcGCGGUGG-------CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 239451 0.66 0.790554
Target:  5'- cGG-GCUcggggacAGCGGUGgC-CCGCGGCgCGUu -3'
miRNA:   3'- -CCaCGA-------UCGUCGCgGuGGCGCCG-GCG- -5'
14534 5' -61.7 NC_003521.1 + 39223 0.66 0.790554
Target:  5'- cGG-GCUcggggacAGCGGUGgC-CCGCGGCgCGUu -3'
miRNA:   3'- -CCaCGA-------UCGUCGCgGuGGCGCCG-GCG- -5'
14534 5' -61.7 NC_003521.1 + 233623 0.66 0.790554
Target:  5'- gGGUGCUcgagggcaauuucAGCGGCGgCGCCGUacuGGa-GCu -3'
miRNA:   3'- -CCACGA-------------UCGUCGCgGUGGCG---CCggCG- -5'
14534 5' -61.7 NC_003521.1 + 30837 0.66 0.790554
Target:  5'- cGGgacGCUGGUGGCcgucuggGCCGuCCGCGGCa-- -3'
miRNA:   3'- -CCa--CGAUCGUCG-------CGGU-GGCGCCGgcg -5'
14534 5' -61.7 NC_003521.1 + 107681 0.66 0.786281
Target:  5'- -cUGCUGGUGGUgguacugguacugcuGCCACUGCuguGGCUGUg -3'
miRNA:   3'- ccACGAUCGUCG---------------CGGUGGCG---CCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 32103 0.66 0.786281
Target:  5'- -aUGCguuUGGCGGCGCgGCUgaucucgggcagguaGCGGgCGCg -3'
miRNA:   3'- ccACG---AUCGUCGCGgUGG---------------CGCCgGCG- -5'
14534 5' -61.7 NC_003521.1 + 180218 0.66 0.78284
Target:  5'- cGGcGUUGGUGGUGCCGCgCGUgugGGCCu- -3'
miRNA:   3'- -CCaCGAUCGUCGCGGUG-GCG---CCGGcg -5'
14534 5' -61.7 NC_003521.1 + 118007 0.66 0.78284
Target:  5'- --cGgUAGCGGCGgCGugUCGCuGCCGCg -3'
miRNA:   3'- ccaCgAUCGUCGCgGU--GGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 116048 0.66 0.78284
Target:  5'- cGGUGCcacUGGCGCaggagaucaACCaGCGGCUGCu -3'
miRNA:   3'- -CCACGaucGUCGCGg--------UGG-CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 142299 0.66 0.78284
Target:  5'- --cGCUgcAGCGGCccaGCCGCgCGCGucGUCGCa -3'
miRNA:   3'- ccaCGA--UCGUCG---CGGUG-GCGC--CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 160761 0.66 0.78284
Target:  5'- uGGUuuucCUuucGCGcGUGCCGCCgGCGGCaCGCg -3'
miRNA:   3'- -CCAc---GAu--CGU-CGCGGUGG-CGCCG-GCG- -5'
14534 5' -61.7 NC_003521.1 + 49730 0.66 0.78284
Target:  5'- uGGUGgacgagacGCAGCccGCCGCCGCcaccacGGUCGCc -3'
miRNA:   3'- -CCACgau-----CGUCG--CGGUGGCG------CCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 47837 0.66 0.78284
Target:  5'- --gGCUgaguaugacgAGCGuGC-CCGCCGUGGCCGa -3'
miRNA:   3'- ccaCGA----------UCGU-CGcGGUGGCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 132338 0.66 0.78284
Target:  5'- gGGUGCUAGUggaAGUGCUgagcacguuGCaggguaucaGCGGCaCGCc -3'
miRNA:   3'- -CCACGAUCG---UCGCGG---------UGg--------CGCCG-GCG- -5'
14534 5' -61.7 NC_003521.1 + 99680 0.66 0.78284
Target:  5'- cGGUGCa--CGGgGUUGCCgaaggucucggGCGGCCGCu -3'
miRNA:   3'- -CCACGaucGUCgCGGUGG-----------CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 3645 0.66 0.78284
Target:  5'- cGUGCca-CGGcCGCCGCCgucugccucgGCGGCCGg -3'
miRNA:   3'- cCACGaucGUC-GCGGUGG----------CGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 25547 0.66 0.78284
Target:  5'- --aGCgacGGCGGaCGCUguuguGCagGCGGCCGCg -3'
miRNA:   3'- ccaCGa--UCGUC-GCGG-----UGg-CGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.