miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 3' -56.8 NC_003521.1 + 148599 0.67 0.91373
Target:  5'- cGCCcgUCGGGcccucacagcgcucGUCGCGCGGCCGggCGGc -3'
miRNA:   3'- uCGG--AGUCC--------------UAGUGUGCCGGUgaGUC- -5'
14536 3' -56.8 NC_003521.1 + 34459 0.67 0.909673
Target:  5'- gGGCCUgGGGGUCGuCGCcgcaGGCCagcaGCUCGc -3'
miRNA:   3'- -UCGGAgUCCUAGU-GUG----CCGG----UGAGUc -5'
14536 3' -56.8 NC_003521.1 + 214023 0.67 0.909673
Target:  5'- cGGCgCUCAGGGUgGCGuuagaccggUGGCCGgaCAGg -3'
miRNA:   3'- -UCG-GAGUCCUAgUGU---------GCCGGUgaGUC- -5'
14536 3' -56.8 NC_003521.1 + 229654 0.67 0.903688
Target:  5'- uGCCUCaccGGGAUCAUccuCGGCUGCUg-- -3'
miRNA:   3'- uCGGAG---UCCUAGUGu--GCCGGUGAguc -5'
14536 3' -56.8 NC_003521.1 + 152510 0.67 0.897482
Target:  5'- aGGCCUCGGGGauggggUC-CAgGGC-GCUCAGc -3'
miRNA:   3'- -UCGGAGUCCU------AGuGUgCCGgUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 125102 0.67 0.897482
Target:  5'- aGGCgCUgCGGGAUgggCAcCACGGCCGCcgUCAGc -3'
miRNA:   3'- -UCG-GA-GUCCUA---GU-GUGCCGGUG--AGUC- -5'
14536 3' -56.8 NC_003521.1 + 102588 0.67 0.897482
Target:  5'- cGUCUCGGGGcUgGCGCuGGCCACgUCGu -3'
miRNA:   3'- uCGGAGUCCU-AgUGUG-CCGGUG-AGUc -5'
14536 3' -56.8 NC_003521.1 + 17419 0.67 0.891057
Target:  5'- cGCCgcgcCGGGGcgcCACACGGCCcGCgUCGGg -3'
miRNA:   3'- uCGGa---GUCCUa--GUGUGCCGG-UG-AGUC- -5'
14536 3' -56.8 NC_003521.1 + 205817 0.67 0.891057
Target:  5'- uGGaCCUgGGGAUCGCACgaGGCCcauuucuucgGCUCGc -3'
miRNA:   3'- -UC-GGAgUCCUAGUGUG--CCGG----------UGAGUc -5'
14536 3' -56.8 NC_003521.1 + 83965 0.68 0.877568
Target:  5'- aGGUgCUCGGGGUCggugacccgcgACAUGGCCACgUAGa -3'
miRNA:   3'- -UCG-GAGUCCUAG-----------UGUGCCGGUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 6427 0.68 0.877568
Target:  5'- cGCCUCGGGAcgcUCAUugACGGUCAUgaCGGc -3'
miRNA:   3'- uCGGAGUCCU---AGUG--UGCCGGUGa-GUC- -5'
14536 3' -56.8 NC_003521.1 + 222705 0.68 0.877568
Target:  5'- cGGCCgggCGugcGGAUCACcagguugaGGCCGCUCAu -3'
miRNA:   3'- -UCGGa--GU---CCUAGUGug------CCGGUGAGUc -5'
14536 3' -56.8 NC_003521.1 + 223936 0.68 0.877568
Target:  5'- cGGCCgagGGGGUCGagGCGGCCGCggGGa -3'
miRNA:   3'- -UCGGag-UCCUAGUg-UGCCGGUGagUC- -5'
14536 3' -56.8 NC_003521.1 + 99185 0.68 0.876872
Target:  5'- uGGCUg-AGGGUCACgucggugACGGCCGCggcgCAGu -3'
miRNA:   3'- -UCGGagUCCUAGUG-------UGCCGGUGa---GUC- -5'
14536 3' -56.8 NC_003521.1 + 84426 0.68 0.863252
Target:  5'- cAGCggCAGGGUgGCgaaGCGGCC-CUCGGu -3'
miRNA:   3'- -UCGgaGUCCUAgUG---UGCCGGuGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 172990 0.68 0.863252
Target:  5'- cGCCuUCuGGGUCGCGgGGCuCACUUg- -3'
miRNA:   3'- uCGG-AGuCCUAGUGUgCCG-GUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 28177 0.68 0.863252
Target:  5'- cGcCCUCuucGGGUCGCAUGGCCAagUCGc -3'
miRNA:   3'- uC-GGAGu--CCUAGUGUGCCGGUg-AGUc -5'
14536 3' -56.8 NC_003521.1 + 118246 0.68 0.863252
Target:  5'- uGCCUCGugucggguGGAUCACGCGGUaGC-CGGc -3'
miRNA:   3'- uCGGAGU--------CCUAGUGUGCCGgUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 151675 0.68 0.863252
Target:  5'- cAGCCgucCAGGGUCuuGCGGUCG-UCAGc -3'
miRNA:   3'- -UCGGa--GUCCUAGugUGCCGGUgAGUC- -5'
14536 3' -56.8 NC_003521.1 + 119720 0.68 0.855795
Target:  5'- cAGCCUCagcGGGAUgGCccCGGCCcggaagaugaACUCGGg -3'
miRNA:   3'- -UCGGAG---UCCUAgUGu-GCCGG----------UGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.