Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14539 | 3' | -56.7 | NC_003521.1 | + | 119641 | 0.66 | 0.926229 |
Target: 5'- -aCUGGccgcGGGCGUCCGUCUCcgcuuuGUGGa- -3' miRNA: 3'- uaGACCa---UCUGCGGGCAGAG------CACCau -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 149658 | 0.66 | 0.920891 |
Target: 5'- -cCUGGUgcGGGCuGCCCGacaUCGUGGg- -3' miRNA: 3'- uaGACCA--UCUG-CGGGCag-AGCACCau -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 74533 | 0.67 | 0.89728 |
Target: 5'- -gCUGGUGGA-GCCC-UCguaCGUGGUGg -3' miRNA: 3'- uaGACCAUCUgCGGGcAGa--GCACCAU- -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 196002 | 0.67 | 0.884145 |
Target: 5'- ---aGGUAGACGCCgGcCUCGUGc-- -3' miRNA: 3'- uagaCCAUCUGCGGgCaGAGCACcau -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 35921 | 0.68 | 0.837391 |
Target: 5'- -aCUGGUGGGCGCCUGgucCUCaacggggacguaguGUGGUu -3' miRNA: 3'- uaGACCAUCUGCGGGCa--GAG--------------CACCAu -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 178421 | 0.69 | 0.831732 |
Target: 5'- -aCUGGUAGcCGCCgagguccugCGUCUCcGUGGUu -3' miRNA: 3'- uaGACCAUCuGCGG---------GCAGAG-CACCAu -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 191601 | 0.7 | 0.780011 |
Target: 5'- ---gGGUaAGAUGCCCGUCccuUCGUGGa- -3' miRNA: 3'- uagaCCA-UCUGCGGGCAG---AGCACCau -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 101937 | 0.71 | 0.723755 |
Target: 5'- --gUGGUAGAUGCCCGuguccaggcuguUCUCGgGGUGc -3' miRNA: 3'- uagACCAUCUGCGGGC------------AGAGCaCCAU- -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 26734 | 0.72 | 0.654828 |
Target: 5'- -gCUGGUccuGACGCCCGUgaUGUGGUc -3' miRNA: 3'- uaGACCAu--CUGCGGGCAgaGCACCAu -5' |
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14539 | 3' | -56.7 | NC_003521.1 | + | 168049 | 1.05 | 0.00678 |
Target: 5'- cAUCUGGUAGACGCCCGUCUCGUGGUAg -3' miRNA: 3'- -UAGACCAUCUGCGGGCAGAGCACCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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