miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14539 5' -60.3 NC_003521.1 + 45236 0.66 0.843358
Target:  5'- aGGCGCCGcCCGGcagaCGGGccUGaCCC-CCAAg -3'
miRNA:   3'- -CCGUGGU-GGCCa---GCCU--AC-GGGaGGUU- -5'
14539 5' -60.3 NC_003521.1 + 60710 0.66 0.843358
Target:  5'- gGGCGgCGCgGGUCGcAccacgccgcUGCCCUCCc- -3'
miRNA:   3'- -CCGUgGUGgCCAGCcU---------ACGGGAGGuu -5'
14539 5' -60.3 NC_003521.1 + 120285 0.66 0.835614
Target:  5'- cGGgACCGCCGGcCGccGAggGCCCUUCc- -3'
miRNA:   3'- -CCgUGGUGGCCaGC--CUa-CGGGAGGuu -5'
14539 5' -60.3 NC_003521.1 + 152735 0.66 0.835614
Target:  5'- --gGCCACCaGcCGGuUGUCCUCCAc -3'
miRNA:   3'- ccgUGGUGGcCaGCCuACGGGAGGUu -5'
14539 5' -60.3 NC_003521.1 + 200532 0.66 0.835614
Target:  5'- uGCGuCCACCGGUCuGgcGUCC-CCAGg -3'
miRNA:   3'- cCGU-GGUGGCCAGcCuaCGGGaGGUU- -5'
14539 5' -60.3 NC_003521.1 + 304 0.66 0.835614
Target:  5'- uGCGuCCACCGGUCuGgcGUCC-CCAGg -3'
miRNA:   3'- cCGU-GGUGGCCAGcCuaCGGGaGGUU- -5'
14539 5' -60.3 NC_003521.1 + 176786 0.66 0.827705
Target:  5'- aGCACCuccagcACCuGGUCGauGGUGCgCUCCAGc -3'
miRNA:   3'- cCGUGG------UGG-CCAGC--CUACGgGAGGUU- -5'
14539 5' -60.3 NC_003521.1 + 220184 0.66 0.827705
Target:  5'- aGGCGcCCACCaG-CGcGcgGCUCUCCGAg -3'
miRNA:   3'- -CCGU-GGUGGcCaGC-CuaCGGGAGGUU- -5'
14539 5' -60.3 NC_003521.1 + 93183 0.66 0.819636
Target:  5'- cGGgGCUcgaCGGUCGGAggUGCCagaUCCGAu -3'
miRNA:   3'- -CCgUGGug-GCCAGCCU--ACGGg--AGGUU- -5'
14539 5' -60.3 NC_003521.1 + 201398 0.66 0.819636
Target:  5'- cGGCGCCGCCuacGGgacUGGAcgGCCUgugCCAAc -3'
miRNA:   3'- -CCGUGGUGG---CCa--GCCUa-CGGGa--GGUU- -5'
14539 5' -60.3 NC_003521.1 + 1170 0.66 0.819636
Target:  5'- cGGCGCCGCCuacGGgacUGGAcgGCCUgugCCAAc -3'
miRNA:   3'- -CCGUGGUGG---CCa--GCCUa-CGGGa--GGUU- -5'
14539 5' -60.3 NC_003521.1 + 196939 0.66 0.819636
Target:  5'- cGGCAgCACCGGUagcgUGGGcgacgGCCCgggagCCGg -3'
miRNA:   3'- -CCGUgGUGGCCA----GCCUa----CGGGa----GGUu -5'
14539 5' -60.3 NC_003521.1 + 199727 0.66 0.819636
Target:  5'- aGCACCACCGcGUugagCGGuccGCCCaCCAGg -3'
miRNA:   3'- cCGUGGUGGC-CA----GCCua-CGGGaGGUU- -5'
14539 5' -60.3 NC_003521.1 + 22184 0.66 0.819636
Target:  5'- aGGCGCCGCCGGccgUGGccGCUUaCCGc -3'
miRNA:   3'- -CCGUGGUGGCCa--GCCuaCGGGaGGUu -5'
14539 5' -60.3 NC_003521.1 + 127807 0.66 0.81882
Target:  5'- cGCACCagcacguGCCGGUCGaaGGUGCCCg---- -3'
miRNA:   3'- cCGUGG-------UGGCCAGC--CUACGGGagguu -5'
14539 5' -60.3 NC_003521.1 + 174067 0.66 0.811413
Target:  5'- cGGCAUCACCcgcgGGAUGUCgUCCAGu -3'
miRNA:   3'- -CCGUGGUGGccagCCUACGGgAGGUU- -5'
14539 5' -60.3 NC_003521.1 + 30711 0.66 0.803045
Target:  5'- cGGCGCCGCgGGcucaugUCGcGUGaCCUCCGAc -3'
miRNA:   3'- -CCGUGGUGgCC------AGCcUACgGGAGGUU- -5'
14539 5' -60.3 NC_003521.1 + 119806 0.66 0.803045
Target:  5'- cGGCGCCGCCgaggaGGUCuGGAgcagcgGCUccgaCUCCGAc -3'
miRNA:   3'- -CCGUGGUGG-----CCAG-CCUa-----CGG----GAGGUU- -5'
14539 5' -60.3 NC_003521.1 + 91852 0.66 0.803045
Target:  5'- cGCGCCAgCacgCGGAugauggcgcUGCCCUCCAGc -3'
miRNA:   3'- cCGUGGUgGccaGCCU---------ACGGGAGGUU- -5'
14539 5' -60.3 NC_003521.1 + 22599 0.66 0.794537
Target:  5'- cGGCcCCugCGGUCGccUGaCCUCCGu -3'
miRNA:   3'- -CCGuGGugGCCAGCcuACgGGAGGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.