Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1454 | 3' | -59.2 | NC_001335.1 | + | 12316 | 0.66 | 0.448076 |
Target: 5'- cAGUGGAAGgCGUA---CUCGGCCUCGa -3' miRNA: 3'- -UCGCCUUCgGCGUcccGAGUUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 9864 | 0.78 | 0.081572 |
Target: 5'- cGGCGGu-GCCGUGGGGCUCGgggaGCCUgGg -3' miRNA: 3'- -UCGCCuuCGGCGUCCCGAGU----UGGAgC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 23984 | 0.7 | 0.254082 |
Target: 5'- cAGCGGAcGCCGUgguguuuccuccAGGGCcucCGGCCUUGc -3' miRNA: 3'- -UCGCCUuCGGCG------------UCCCGa--GUUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 43732 | 0.7 | 0.267231 |
Target: 5'- cGUGGuuGCCGCAGGGCaccgcguuUCAcACCgUCGc -3' miRNA: 3'- uCGCCuuCGGCGUCCCG--------AGU-UGG-AGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 3227 | 0.7 | 0.267231 |
Target: 5'- gAGCGGcugguAGCgGCAGcGGCUCuagaaaccCCUCGg -3' miRNA: 3'- -UCGCCu----UCGgCGUC-CCGAGuu------GGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 39586 | 0.69 | 0.292997 |
Target: 5'- uGCGaGAGGCCGaaAGGGCcggcauucccgucaUCAACUUCGg -3' miRNA: 3'- uCGC-CUUCGGCg-UCCCG--------------AGUUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 32430 | 0.69 | 0.312996 |
Target: 5'- gAGCcaagGGGAGCUGUagaAGGGCUUcgcugcccccuggcuGACCUCGu -3' miRNA: 3'- -UCG----CCUUCGGCG---UCCCGAG---------------UUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 5054 | 0.67 | 0.401282 |
Target: 5'- uGCGGuuGCCGUGGGaCUCccagucgacGCCUCGg -3' miRNA: 3'- uCGCCuuCGGCGUCCcGAGu--------UGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 7311 | 0.67 | 0.404002 |
Target: 5'- gGGCGGuuacccuccaucgaCGCGGGGCUCGaggucgcuGCCUCa -3' miRNA: 3'- -UCGCCuucg----------GCGUCCCGAGU--------UGGAGc -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 34470 | 0.66 | 0.448076 |
Target: 5'- cAGCGGGuguacgacgugAGCCGCauccggccgcaaGGGGC-CAAgCUCa -3' miRNA: 3'- -UCGCCU-----------UCGGCG------------UCCCGaGUUgGAGc -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 4820 | 0.66 | 0.477561 |
Target: 5'- aAGCGGAuGCCccgagGC-GGGCcagCGGCCUUGc -3' miRNA: 3'- -UCGCCUuCGG-----CGuCCCGa--GUUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 7199 | 0.67 | 0.419629 |
Target: 5'- cAGcCGGuGGCCGUAuuGaGGCagCGACCUCGa -3' miRNA: 3'- -UC-GCCuUCGGCGU--C-CCGa-GUUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 8618 | 0.67 | 0.419629 |
Target: 5'- gAGCGccAGGCCGUcgAGGGUUUccGCCUCGg -3' miRNA: 3'- -UCGCc-UUCGGCG--UCCCGAGu-UGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 29186 | 0.67 | 0.401282 |
Target: 5'- uGGUGGAGGuCCGCAccGUUCucgaauGCCUCGa -3' miRNA: 3'- -UCGCCUUC-GGCGUccCGAGu-----UGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 16059 | 0.68 | 0.374741 |
Target: 5'- cGGCGGcAGCCG-GGGGCUCGGagaUCu -3' miRNA: 3'- -UCGCCuUCGGCgUCCCGAGUUgg-AGc -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 1834 | 0.68 | 0.374741 |
Target: 5'- cGGCGuGggGCUGU-GGGC-CAGCCUg- -3' miRNA: 3'- -UCGC-CuuCGGCGuCCCGaGUUGGAgc -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 15881 | 0.68 | 0.349413 |
Target: 5'- gAGCGGGAGCUuaAGGGCgaugucgagaUCAACggucauCUCGa -3' miRNA: 3'- -UCGCCUUCGGcgUCCCG----------AGUUG------GAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 9722 | 0.7 | 0.274009 |
Target: 5'- aGGaaGAGGCCGCAauGGGuCUCGGCCUg- -3' miRNA: 3'- -UCgcCUUCGGCGU--CCC-GAGUUGGAgc -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 10386 | 1.09 | 0.000377 |
Target: 5'- cAGCGGAAGCCGCAGGGCUCAACCUCGa -3' miRNA: 3'- -UCGCCUUCGGCGUCCCGAGUUGGAGC- -5' |
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1454 | 3' | -59.2 | NC_001335.1 | + | 1205 | 0.66 | 0.497739 |
Target: 5'- cAGCGGAGGCgGCAaGGGaacggCAGCgC-CGg -3' miRNA: 3'- -UCGCCUUCGgCGU-CCCga---GUUG-GaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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