Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 7822 | 0.66 | 0.80931 |
|
Target: 5'- gACCG-GAUCacCCUCgGGuucGACGGGUCg -3' miRNA: 3'- -UGGCaCUAGcuGGAGaCC---UUGCUCAG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 37702 | 0.66 | 0.789825 |
|
Target: 5'- uGCCGgGAUCGACUUC---GACGcAGUCg -3' miRNA: 3'- -UGGCaCUAGCUGGAGaccUUGC-UCAG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 47615 | 0.67 | 0.748933 |
|
Target: 5'- cAUCGUGA-CGAugauguggucCCUCUGGAGcCGAGcCu -3' miRNA: 3'- -UGGCACUaGCU----------GGAGACCUU-GCUCaG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 11338 | 0.68 | 0.695178 |
|
Target: 5'- gGCCuUGAU-GGCCUCgaGGAuCGGGUCa -3' miRNA: 3'- -UGGcACUAgCUGGAGa-CCUuGCUCAG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 19293 | 0.68 | 0.673157 |
|
Target: 5'- gGCCGUGGUCGcGCUgCUGGGGgcuaGAGUg -3' miRNA: 3'- -UGGCACUAGC-UGGaGACCUUg---CUCAg -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 42744 | 0.68 | 0.655422 |
|
Target: 5'- gAUCGUGAUCGAgUUCgaggacggucggagaUGGAACGGG-Ca -3' miRNA: 3'- -UGGCACUAGCUgGAG---------------ACCUUGCUCaG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 46487 | 0.68 | 0.650978 |
|
Target: 5'- gGCCGUGGaaUCGGCCggCgggGGAGCGuuGGUg -3' miRNA: 3'- -UGGCACU--AGCUGGa-Ga--CCUUGC--UCAg -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 17646 | 0.68 | 0.650978 |
|
Target: 5'- uGCCGuUGAUCaGGCC-CUGG-ACGAGaUCc -3' miRNA: 3'- -UGGC-ACUAG-CUGGaGACCuUGCUC-AG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 13521 | 0.69 | 0.617602 |
|
Target: 5'- gAUCGUGuaGUCGACCcgCgccaacgcagGGGAUGAGUCg -3' miRNA: 3'- -UGGCAC--UAGCUGGa-Ga---------CCUUGCUCAG- -5' |
|||||||
| 1454 | 5' | -53.7 | NC_001335.1 | + | 10420 | 1.09 | 0.001528 |
|
Target: 5'- gACCGUGAUCGACCUCUGGAACGAGUCc -3' miRNA: 3'- -UGGCACUAGCUGGAGACCUUGCUCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home