miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 3' -53.5 NC_003521.1 + 22363 0.67 0.979668
Target:  5'- uGCGCccacggCGUGGUGCcgGCCAuGUCCu -3'
miRNA:   3'- cUGCGca----GUACCACGagUGGUuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 203984 0.67 0.97945
Target:  5'- cGAgGCGUaggacgaCAUGGacgacgaGCUCAugcCCGAGUCCg -3'
miRNA:   3'- -CUgCGCA-------GUACCa------CGAGU---GGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 204807 0.67 0.977408
Target:  5'- aGACG-GUCGUGGgGC-CGCCAccUCCg -3'
miRNA:   3'- -CUGCgCAGUACCaCGaGUGGUucAGG- -5'
14545 3' -53.5 NC_003521.1 + 126633 0.67 0.977408
Target:  5'- uGAUGuCGUCGUuGaUGCccgagccgaUCACCGGGUCCg -3'
miRNA:   3'- -CUGC-GCAGUAcC-ACG---------AGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 85471 0.67 0.97522
Target:  5'- gGugGuCGUCGUGGUGCcggugcccgcgccccCGCCGGGaCCc -3'
miRNA:   3'- -CugC-GCAGUACCACGa--------------GUGGUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 137488 0.67 0.974967
Target:  5'- cGGCGUGUCGcGGcGC-CGCgAGGUCUg -3'
miRNA:   3'- -CUGCGCAGUaCCaCGaGUGgUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 225661 0.68 0.97234
Target:  5'- --gGUGUCGUagcGGUGCagCACCAaggcguuggGGUCCa -3'
miRNA:   3'- cugCGCAGUA---CCACGa-GUGGU---------UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 97622 0.68 0.970671
Target:  5'- cACGuCGUCGUGcucagGCUCgacguucgcggcggcGCCGGGUCCg -3'
miRNA:   3'- cUGC-GCAGUACca---CGAG---------------UGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 224723 0.68 0.96952
Target:  5'- -cCGCc-CGUGGUGCUCGCCGacgcAGgcggCCa -3'
miRNA:   3'- cuGCGcaGUACCACGAGUGGU----UCa---GG- -5'
14545 3' -53.5 NC_003521.1 + 66595 0.68 0.9665
Target:  5'- --aGCGUCAUGaucGCUCGCCAAccCCa -3'
miRNA:   3'- cugCGCAGUACca-CGAGUGGUUcaGG- -5'
14545 3' -53.5 NC_003521.1 + 128271 0.68 0.966187
Target:  5'- gGAgGCGUucucgaaCAUGGUGCUgACCAGcucgCCg -3'
miRNA:   3'- -CUgCGCA-------GUACCACGAgUGGUUca--GG- -5'
14545 3' -53.5 NC_003521.1 + 225846 0.68 0.963275
Target:  5'- cGGCGCGcUCgugGUGGUGCggGCaCAGGUgCCg -3'
miRNA:   3'- -CUGCGC-AG---UACCACGagUG-GUUCA-GG- -5'
14545 3' -53.5 NC_003521.1 + 159805 0.68 0.959839
Target:  5'- aGACcaGCGUCAaGGUGCUgcgggacaugcaCACCAAGgagaagggCCg -3'
miRNA:   3'- -CUG--CGCAGUaCCACGA------------GUGGUUCa-------GG- -5'
14545 3' -53.5 NC_003521.1 + 210663 0.69 0.953503
Target:  5'- aGACGCGgagCAUGGcccaauagucccccUGauaccacaugugCACCAAGUCCa -3'
miRNA:   3'- -CUGCGCa--GUACC--------------ACga----------GUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 152893 0.69 0.952318
Target:  5'- cGCGCaGcUCGUgcacgcGGUGCUC-CCAGGUCUg -3'
miRNA:   3'- cUGCG-C-AGUA------CCACGAGuGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 15667 0.69 0.948225
Target:  5'- aGCGcCGagGUGGUGCgcgACUggGUCCg -3'
miRNA:   3'- cUGC-GCagUACCACGag-UGGuuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 233375 0.69 0.943906
Target:  5'- cACGUcccgCGUGGUGCUgugCGCCGcGUCCg -3'
miRNA:   3'- cUGCGca--GUACCACGA---GUGGUuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 91206 0.69 0.939358
Target:  5'- gGGCGCGUCGUGG-GCacagUACgGGGaUCCc -3'
miRNA:   3'- -CUGCGCAGUACCaCGa---GUGgUUC-AGG- -5'
14545 3' -53.5 NC_003521.1 + 134880 0.69 0.93889
Target:  5'- uGCGCGaUCuuguUGGUGC-CGCCGAugaucucGUCCa -3'
miRNA:   3'- cUGCGC-AGu---ACCACGaGUGGUU-------CAGG- -5'
14545 3' -53.5 NC_003521.1 + 180108 0.69 0.934579
Target:  5'- gGGCaGCGgCGUGGUGCgacccgCGCCGcccccgGGUCCc -3'
miRNA:   3'- -CUG-CGCaGUACCACGa-----GUGGU------UCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.