miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 5' -55.1 NC_003521.1 + 39523 0.67 0.963543
Target:  5'- -aGGGGUcGcGCG-GCGAgagC-UGGCGCa -3'
miRNA:   3'- gaCCCCAaC-CGCuCGCUa--GuACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 53164 0.67 0.960172
Target:  5'- -cGGGGacggcGGCGAGgaGGUCGgcGACGCc -3'
miRNA:   3'- gaCCCCaa---CCGCUCg-CUAGUa-CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 104021 0.67 0.960172
Target:  5'- -cGGGGUcgucGGCGGGCag-CGUGAcCGUg -3'
miRNA:   3'- gaCCCCAa---CCGCUCGcuaGUACU-GCG- -5'
14545 5' -55.1 NC_003521.1 + 233344 0.67 0.9528
Target:  5'- aUGGGGaacccGGCGAGCcugcugGAUCcgcgGAUGCg -3'
miRNA:   3'- gACCCCaa---CCGCUCG------CUAGua--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 77027 0.67 0.9528
Target:  5'- aUGcGGUUgaGGCcGGCGGUgGUGGCGCc -3'
miRNA:   3'- gACcCCAA--CCGcUCGCUAgUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 172345 0.67 0.9528
Target:  5'- gUGaGGGgcGGCGGGU--UC-UGACGCa -3'
miRNA:   3'- gAC-CCCaaCCGCUCGcuAGuACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 44948 0.67 0.9528
Target:  5'- gCUGGGGaugGGCagucccgaGAGCGAggcgacagCGcUGACGCc -3'
miRNA:   3'- -GACCCCaa-CCG--------CUCGCUa-------GU-ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 224432 0.67 0.94879
Target:  5'- gCUGcGuGGUgGGCGAGCGGUCcagGUG-CGUc -3'
miRNA:   3'- -GAC-C-CCAaCCGCUCGCUAG---UACuGCG- -5'
14545 5' -55.1 NC_003521.1 + 46512 0.67 0.94879
Target:  5'- uUGGGGUgcUGGCacacGGGCGucuUCuccaGGCGCa -3'
miRNA:   3'- gACCCCA--ACCG----CUCGCu--AGua--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 177792 0.68 0.944561
Target:  5'- -cGGGGccuguccgcUGGUGGGCG-UCGUGgGCGCc -3'
miRNA:   3'- gaCCCCa--------ACCGCUCGCuAGUAC-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 131044 0.68 0.944561
Target:  5'- cCUGGGcGgcGGCG-GCGggCcucugGACGCg -3'
miRNA:   3'- -GACCC-CaaCCGCuCGCuaGua---CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 27343 0.68 0.944561
Target:  5'- cCUGuGGaUGGCGugcaccGGCGccGUCAUGACGUg -3'
miRNA:   3'- -GACcCCaACCGC------UCGC--UAGUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 34372 0.68 0.940109
Target:  5'- cCUGGGcGUUGcGCaccAGCaGGUgGUGGCGCu -3'
miRNA:   3'- -GACCC-CAAC-CGc--UCG-CUAgUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 86388 0.68 0.940109
Target:  5'- -aGGGGaagaagGGCcAGCGGUCGacgcggggGACGCg -3'
miRNA:   3'- gaCCCCaa----CCGcUCGCUAGUa-------CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 24231 0.68 0.935433
Target:  5'- -aGcGGGUUGggcaGCGGGCGGUCG-GGCGg -3'
miRNA:   3'- gaC-CCCAAC----CGCUCGCUAGUaCUGCg -5'
14545 5' -55.1 NC_003521.1 + 19967 0.68 0.935433
Target:  5'- --cGGGcUGGCG-GUGAUCGUGACc- -3'
miRNA:   3'- gacCCCaACCGCuCGCUAGUACUGcg -5'
14545 5' -55.1 NC_003521.1 + 169978 0.68 0.930532
Target:  5'- cCUGGGaGgcGGCG-GCGGgg--GACGCu -3'
miRNA:   3'- -GACCC-CaaCCGCuCGCUaguaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 97016 0.68 0.925404
Target:  5'- gCUGGGGUUGcGCGGGUucacGUCgAUGA-GCa -3'
miRNA:   3'- -GACCCCAAC-CGCUCGc---UAG-UACUgCG- -5'
14545 5' -55.1 NC_003521.1 + 221880 0.68 0.925404
Target:  5'- gCUGGGGUagGGCGuGUGGggCGgauugccGGCGCg -3'
miRNA:   3'- -GACCCCAa-CCGCuCGCUa-GUa------CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 7730 0.68 0.920051
Target:  5'- gUGGGGagGGCGGcGCGAgCGgcgGAgGCg -3'
miRNA:   3'- gACCCCaaCCGCU-CGCUaGUa--CUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.