miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 3' -52.5 NC_003521.1 + 129664 0.66 0.992674
Target:  5'- gGGGCGGccgcGCUAUgcggACCGUCccgUGGCc -3'
miRNA:   3'- -UCCGCC----CGGUAaa--UGGCAGua-ACUGc -5'
14547 3' -52.5 NC_003521.1 + 77046 0.66 0.992674
Target:  5'- uGGUGGcGCCGc-UACCGUUGUUGcCGc -3'
miRNA:   3'- uCCGCC-CGGUaaAUGGCAGUAACuGC- -5'
14547 3' -52.5 NC_003521.1 + 145875 0.66 0.992674
Target:  5'- cGGGCGGcGCCGacgacgagGCCGcCGgcGGCGg -3'
miRNA:   3'- -UCCGCC-CGGUaaa-----UGGCaGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 36614 0.66 0.992674
Target:  5'- aGGGCGGGCUg--UGCuCGUCcaugGugGu -3'
miRNA:   3'- -UCCGCCCGGuaaAUG-GCAGuaa-CugC- -5'
14547 3' -52.5 NC_003521.1 + 98975 0.66 0.992674
Target:  5'- gAGGCGGuGCCGggaGCCGUa---GGCGc -3'
miRNA:   3'- -UCCGCC-CGGUaaaUGGCAguaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 168381 0.67 0.99195
Target:  5'- cGGCGGGCaggauguagguggcgUUGCCGcCGUUGGUGg -3'
miRNA:   3'- uCCGCCCGgua------------AAUGGCaGUAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 199366 0.67 0.991624
Target:  5'- -cGUGGGCCAcc-ACCGUgGUguaGACGg -3'
miRNA:   3'- ucCGCCCGGUaaaUGGCAgUAa--CUGC- -5'
14547 3' -52.5 NC_003521.1 + 172463 0.67 0.9914
Target:  5'- gAGGCaGGGCCGgcagcggugcGCCGUCGgcggGAUa -3'
miRNA:   3'- -UCCG-CCCGGUaaa-------UGGCAGUaa--CUGc -5'
14547 3' -52.5 NC_003521.1 + 136696 0.67 0.991171
Target:  5'- aGGGCGGGCCcgagcaggacGCCGcCGagGAUGg -3'
miRNA:   3'- -UCCGCCCGGuaaa------UGGCaGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 212001 0.67 0.990457
Target:  5'- cAGGCGccgcagacacGCCAgguacugGCCGUCggUGACGg -3'
miRNA:   3'- -UCCGCc---------CGGUaaa----UGGCAGuaACUGC- -5'
14547 3' -52.5 NC_003521.1 + 172327 0.67 0.990457
Target:  5'- uGGCGcaGGCCucg-GCCGUCcugUGGCa -3'
miRNA:   3'- uCCGC--CCGGuaaaUGGCAGua-ACUGc -5'
14547 3' -52.5 NC_003521.1 + 127049 0.67 0.989167
Target:  5'- -cGCuGGCCGUc-GCCGUCGUcGACGc -3'
miRNA:   3'- ucCGcCCGGUAaaUGGCAGUAaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 128769 0.67 0.989167
Target:  5'- uGGUGGGguucuCCAggaUGCUGUCggUGGCGg -3'
miRNA:   3'- uCCGCCC-----GGUaa-AUGGCAGuaACUGC- -5'
14547 3' -52.5 NC_003521.1 + 88674 0.67 0.987745
Target:  5'- cGGUGGGCCGgcgGCCcggcUCGggGACa -3'
miRNA:   3'- uCCGCCCGGUaaaUGGc---AGUaaCUGc -5'
14547 3' -52.5 NC_003521.1 + 169462 0.67 0.987745
Target:  5'- cGGCGGGUUcgUcGCCaggcgcgucGUCGUUGGCc -3'
miRNA:   3'- uCCGCCCGGuaAaUGG---------CAGUAACUGc -5'
14547 3' -52.5 NC_003521.1 + 34289 0.67 0.987745
Target:  5'- gGGGCGGGCCAcg-GgCGUCAc----- -3'
miRNA:   3'- -UCCGCCCGGUaaaUgGCAGUaacugc -5'
14547 3' -52.5 NC_003521.1 + 150791 0.67 0.986183
Target:  5'- cGGGCGGGCgCGa--GCCGcCAgggGGCGc -3'
miRNA:   3'- -UCCGCCCG-GUaaaUGGCaGUaa-CUGC- -5'
14547 3' -52.5 NC_003521.1 + 179073 0.67 0.986183
Target:  5'- -aGCGGGUCGcgUGCCcGUCGUcggUGACa -3'
miRNA:   3'- ucCGCCCGGUaaAUGG-CAGUA---ACUGc -5'
14547 3' -52.5 NC_003521.1 + 172315 0.67 0.986183
Target:  5'- cGGUGGcGCCAg--GCCGgucgCGgcgGACGg -3'
miRNA:   3'- uCCGCC-CGGUaaaUGGCa---GUaa-CUGC- -5'
14547 3' -52.5 NC_003521.1 + 11734 0.67 0.986183
Target:  5'- cGGCGaGUCG---GCCGUCAUcGACGg -3'
miRNA:   3'- uCCGCcCGGUaaaUGGCAGUAaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.