Results 61 - 80 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14547 | 5' | -53 | NC_003521.1 | + | 38240 | 0.67 | 0.985816 |
Target: 5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3' miRNA: 3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 196952 | 0.67 | 0.987099 |
Target: 5'- aGCGUGGgcgacggcccggGAGcCGGccggggcgccugUGAcgGGCCCGCg -3' miRNA: 3'- cCGCACCa-----------CUU-GCC------------AUUuaCCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 24363 | 0.67 | 0.987252 |
Target: 5'- aGGUGcUGGUGAugcugAUGGUAGuucucaaaaagccGgcgccgGGCCCGCg -3' miRNA: 3'- -CCGC-ACCACU-----UGCCAUU-------------Ua-----CCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 186815 | 0.67 | 0.987405 |
Target: 5'- cGGCGUGGgcGAccagaucugACGGUccugcGAAUggcGGCCCAg -3' miRNA: 3'- -CCGCACCa-CU---------UGCCA-----UUUA---CCGGGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 90973 | 0.66 | 0.988574 |
Target: 5'- cGGCGUGGUuuaugggauggcGACGGUuaccUGGCaaCCACg -3' miRNA: 3'- -CCGCACCAc-----------UUGCCAuuu-ACCG--GGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 142941 | 0.66 | 0.988714 |
Target: 5'- cGGCGgucagGGUcAGCGG-GGGccccuggucucccUGGCCCGCa -3' miRNA: 3'- -CCGCa----CCAcUUGCCaUUU-------------ACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 50845 | 0.66 | 0.989657 |
Target: 5'- cGGCGgcuuuuugagaaGGUGGACGGgucccUGAGgaacggcucggcGGCCCGCa -3' miRNA: 3'- -CCGCa-----------CCACUUGCC-----AUUUa-----------CCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 30788 | 0.66 | 0.990168 |
Target: 5'- uGGaUGUGG-GcGCGGUAGcgcaccgagGGCCCGCc -3' miRNA: 3'- -CC-GCACCaCuUGCCAUUua-------CCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 33640 | 0.66 | 0.990778 |
Target: 5'- aGGcCGUGGagGGGCGGccagcagagcggGAuccagcgaccggccGUGGCCCGCa -3' miRNA: 3'- -CC-GCACCa-CUUGCCa-----------UU--------------UACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 218380 | 0.66 | 0.991245 |
Target: 5'- aGGCGUGccgcGUGAagcgcggGCGGUAcucGGCCaCGCc -3' miRNA: 3'- -CCGCAC----CACU-------UGCCAUuuaCCGG-GUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 199779 | 0.66 | 0.991358 |
Target: 5'- aGGCuucGGUGGuACGG---AUGGCCUGCa -3' miRNA: 3'- -CCGca-CCACU-UGCCauuUACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 26532 | 0.66 | 0.991358 |
Target: 5'- -cCGUGGUGAugGGcauccUGGCCUc- -3' miRNA: 3'- ccGCACCACUugCCauuu-ACCGGGug -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 36416 | 0.66 | 0.991358 |
Target: 5'- gGGCGUGGauuucGCGGUcgGaGGgCCGCg -3' miRNA: 3'- -CCGCACCacu--UGCCAuuUaCCgGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 158884 | 0.66 | 0.991358 |
Target: 5'- uGCaUGGUG-ACGGUGAccaccGCCCGCu -3' miRNA: 3'- cCGcACCACuUGCCAUUuac--CGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 59718 | 0.66 | 0.991358 |
Target: 5'- cGcCGUGGccGAGCuGGUGGAcaUGGCCUAUc -3' miRNA: 3'- cC-GCACCa-CUUG-CCAUUU--ACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 69245 | 0.66 | 0.991358 |
Target: 5'- uGGUGcUGGUGAugAUGGUGGccgacGUGGCaaGCg -3' miRNA: 3'- -CCGC-ACCACU--UGCCAUU-----UACCGggUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 162982 | 0.66 | 0.992432 |
Target: 5'- --aGUGGUGGgcACGG---GUGGCCC-Ca -3' miRNA: 3'- ccgCACCACU--UGCCauuUACCGGGuG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 224822 | 0.66 | 0.992432 |
Target: 5'- gGGCGUcugcGGcuGGCGGUAGAUGGaCUCGg -3' miRNA: 3'- -CCGCA----CCacUUGCCAUUUACC-GGGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 123210 | 0.66 | 0.993305 |
Target: 5'- cGGCGccgGGUaGGacgggggcgGCGGUAGGUGGUcguagcgCCGCg -3' miRNA: 3'- -CCGCa--CCA-CU---------UGCCAUUUACCG-------GGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 198831 | 0.66 | 0.993396 |
Target: 5'- gGGUGUGGgacAACGGUuuuGGUGGUCgAa -3' miRNA: 3'- -CCGCACCac-UUGCCAu--UUACCGGgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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