miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 129218 0.7 0.940138
Target:  5'- cGCGUGGUGGGCaGUcc--GGCgCCGCu -3'
miRNA:   3'- cCGCACCACUUGcCAuuuaCCG-GGUG- -5'
14547 5' -53 NC_003521.1 + 58851 0.7 0.940138
Target:  5'- uGGCGcGGaUGcccAGCaGGUAAA-GGCCCACg -3'
miRNA:   3'- -CCGCaCC-AC---UUG-CCAUUUaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 124196 0.78 0.547699
Target:  5'- cGGCugggGGUGAGCGGgcccuuucUGGCCCGCg -3'
miRNA:   3'- -CCGca--CCACUUGCCauuu----ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 213203 0.7 0.925164
Target:  5'- aGCGUGaucuUGAACauGGUGAugaGGCCCACg -3'
miRNA:   3'- cCGCACc---ACUUG--CCAUUua-CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 45558 0.7 0.927282
Target:  5'- cGGCGaaUGGUGAGCGuGgagcccuucucgcccUAcucGGUGGCCUACa -3'
miRNA:   3'- -CCGC--ACCACUUGC-C---------------AU---UUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 103546 0.69 0.948959
Target:  5'- aGGCGUGcGUGGggaugACGGggcccAGGUcGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU-----UGCCa----UUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 150549 0.66 0.99426
Target:  5'- cGGCgGUGGUGGuGCGGguGGUGGCggCgGCg -3'
miRNA:   3'- -CCG-CACCACU-UGCCauUUACCG--GgUG- -5'
14547 5' -53 NC_003521.1 + 213749 0.67 0.982183
Target:  5'- aGGcCGUGGUG-GCGGccacguagaAGAUGGCCaGCg -3'
miRNA:   3'- -CC-GCACCACuUGCCa--------UUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 176925 0.67 0.982183
Target:  5'- gGGCGggGGUcgugGGGCGGUcagccAAGUGGgCCAUu -3'
miRNA:   3'- -CCGCa-CCA----CUUGCCA-----UUUACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 31020 0.67 0.982961
Target:  5'- cGGCGaggacgcguucguggUGGUGGGgGGUGGGaGGaCCACg -3'
miRNA:   3'- -CCGC---------------ACCACUUgCCAUUUaCCgGGUG- -5'
14547 5' -53 NC_003521.1 + 224434 0.67 0.984078
Target:  5'- uGCGUGGUGGGCGagc---GGUCCAg -3'
miRNA:   3'- cCGCACCACUUGCcauuuaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 86614 0.67 0.985816
Target:  5'- -uCGUGGUG-GCGGUAGAgcaggaaGCCCAg -3'
miRNA:   3'- ccGCACCACuUGCCAUUUac-----CGGGUg -5'
14547 5' -53 NC_003521.1 + 128320 0.68 0.977892
Target:  5'- -cCGUGGUGuagccGCGGUccucgggcAGGUacaGGCCCACg -3'
miRNA:   3'- ccGCACCACu----UGCCA--------UUUA---CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 121813 0.68 0.977892
Target:  5'- cGGcCGUGGUGG--GGU-AGUGGUgCACg -3'
miRNA:   3'- -CC-GCACCACUugCCAuUUACCGgGUG- -5'
14547 5' -53 NC_003521.1 + 32140 0.68 0.977892
Target:  5'- gGGCGcGGUGcaccaAGCGGcgGAagGcGCCCGCg -3'
miRNA:   3'- -CCGCaCCAC-----UUGCCa-UUuaC-CGGGUG- -5'
14547 5' -53 NC_003521.1 + 232575 0.69 0.948959
Target:  5'- uGUGUGGUGAGCGGgg---GGCgaCAUg -3'
miRNA:   3'- cCGCACCACUUGCCauuuaCCGg-GUG- -5'
14547 5' -53 NC_003521.1 + 162982 0.66 0.992432
Target:  5'- --aGUGGUGGgcACGG---GUGGCCC-Ca -3'
miRNA:   3'- ccgCACCACU--UGCCauuUACCGGGuG- -5'
14547 5' -53 NC_003521.1 + 224822 0.66 0.992432
Target:  5'- gGGCGUcugcGGcuGGCGGUAGAUGGaCUCGg -3'
miRNA:   3'- -CCGCA----CCacUUGCCAUUUACC-GGGUg -5'
14547 5' -53 NC_003521.1 + 102017 0.66 0.993396
Target:  5'- gGGCGUGGuUGAGCacc---UGGgCCACg -3'
miRNA:   3'- -CCGCACC-ACUUGccauuuACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 198831 0.66 0.993396
Target:  5'- gGGUGUGGgacAACGGUuuuGGUGGUCgAa -3'
miRNA:   3'- -CCGCACCac-UUGCCAu--UUACCGGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.