miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 19905 0.71 0.908087
Target:  5'- cGGCGUGcGgGAGCGGcuGGUGGUCCu- -3'
miRNA:   3'- -CCGCAC-CaCUUGCCauUUACCGGGug -5'
14547 5' -53 NC_003521.1 + 128320 0.68 0.977892
Target:  5'- -cCGUGGUGuagccGCGGUccucgggcAGGUacaGGCCCACg -3'
miRNA:   3'- ccGCACCACu----UGCCA--------UUUA---CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 32140 0.68 0.977892
Target:  5'- gGGCGcGGUGcaccaAGCGGcgGAagGcGCCCGCg -3'
miRNA:   3'- -CCGCaCCAC-----UUGCCa-UUuaC-CGGGUG- -5'
14547 5' -53 NC_003521.1 + 162982 0.66 0.992432
Target:  5'- --aGUGGUGGgcACGG---GUGGCCC-Ca -3'
miRNA:   3'- ccgCACCACU--UGCCauuUACCGGGuG- -5'
14547 5' -53 NC_003521.1 + 69245 0.66 0.991358
Target:  5'- uGGUGcUGGUGAugAUGGUGGccgacGUGGCaaGCg -3'
miRNA:   3'- -CCGC-ACCACU--UGCCAUU-----UACCGggUG- -5'
14547 5' -53 NC_003521.1 + 59718 0.66 0.991358
Target:  5'- cGcCGUGGccGAGCuGGUGGAcaUGGCCUAUc -3'
miRNA:   3'- cC-GCACCa-CUUG-CCAUUU--ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 218380 0.66 0.991245
Target:  5'- aGGCGUGccgcGUGAagcgcggGCGGUAcucGGCCaCGCc -3'
miRNA:   3'- -CCGCAC----CACU-------UGCCAUuuaCCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 33640 0.66 0.990778
Target:  5'- aGGcCGUGGagGGGCGGccagcagagcggGAuccagcgaccggccGUGGCCCGCa -3'
miRNA:   3'- -CC-GCACCa-CUUGCCa-----------UU--------------UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 30788 0.66 0.990168
Target:  5'- uGGaUGUGG-GcGCGGUAGcgcaccgagGGCCCGCc -3'
miRNA:   3'- -CC-GCACCaCuUGCCAUUua-------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 142941 0.66 0.988714
Target:  5'- cGGCGgucagGGUcAGCGG-GGGccccuggucucccUGGCCCGCa -3'
miRNA:   3'- -CCGCa----CCAcUUGCCaUUU-------------ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 90973 0.66 0.988574
Target:  5'- cGGCGUGGUuuaugggauggcGACGGUuaccUGGCaaCCACg -3'
miRNA:   3'- -CCGCACCAc-----------UUGCCAuuu-ACCG--GGUG- -5'
14547 5' -53 NC_003521.1 + 186815 0.67 0.987405
Target:  5'- cGGCGUGGgcGAccagaucugACGGUccugcGAAUggcGGCCCAg -3'
miRNA:   3'- -CCGCACCa-CU---------UGCCA-----UUUA---CCGGGUg -5'
14547 5' -53 NC_003521.1 + 24363 0.67 0.987252
Target:  5'- aGGUGcUGGUGAugcugAUGGUAGuucucaaaaagccGgcgccgGGCCCGCg -3'
miRNA:   3'- -CCGC-ACCACU-----UGCCAUU-------------Ua-----CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 238468 0.67 0.985816
Target:  5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3'
miRNA:   3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 86614 0.67 0.985816
Target:  5'- -uCGUGGUG-GCGGUAGAgcaggaaGCCCAg -3'
miRNA:   3'- ccGCACCACuUGCCAUUUac-----CGGGUg -5'
14547 5' -53 NC_003521.1 + 224434 0.67 0.984078
Target:  5'- uGCGUGGUGGGCGagc---GGUCCAg -3'
miRNA:   3'- cCGCACCACUUGCcauuuaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 31020 0.67 0.982961
Target:  5'- cGGCGaggacgcguucguggUGGUGGGgGGUGGGaGGaCCACg -3'
miRNA:   3'- -CCGC---------------ACCACUUgCCAUUUaCCgGGUG- -5'
14547 5' -53 NC_003521.1 + 176925 0.67 0.982183
Target:  5'- gGGCGggGGUcgugGGGCGGUcagccAAGUGGgCCAUu -3'
miRNA:   3'- -CCGCa-CCA----CUUGCCA-----UUUACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 213749 0.67 0.982183
Target:  5'- aGGcCGUGGUG-GCGGccacguagaAGAUGGCCaGCg -3'
miRNA:   3'- -CC-GCACCACuUGCCa--------UUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 368 0.67 0.981985
Target:  5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3'
miRNA:   3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.