miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14549 3' -56.8 NC_003521.1 + 20635 0.66 0.940875
Target:  5'- -gCUCGGAGAGCCGc--GCGCUGGuggGCg -3'
miRNA:   3'- caGGGUCUUUCGGCcucCGCGACU---UG- -5'
14549 3' -56.8 NC_003521.1 + 95409 0.66 0.940875
Target:  5'- -gCCCAGcAAGCCcGAGGUGgggucgaUGAGCa -3'
miRNA:   3'- caGGGUCuUUCGGcCUCCGCg------ACUUG- -5'
14549 3' -56.8 NC_003521.1 + 150782 0.66 0.940875
Target:  5'- cGUCCCGGA--GCUGGAGGCcGUc---- -3'
miRNA:   3'- -CAGGGUCUuuCGGCCUCCG-CGacuug -5'
14549 3' -56.8 NC_003521.1 + 35702 0.66 0.940875
Target:  5'- cUCUCuGAGAgGCCGcGAuaaaaGGCGCUGAAg -3'
miRNA:   3'- cAGGGuCUUU-CGGC-CU-----CCGCGACUUg -5'
14549 3' -56.8 NC_003521.1 + 174128 0.66 0.93622
Target:  5'- -cCUCAGggGGUCgcagcccaGGAGGUaCUGAGCa -3'
miRNA:   3'- caGGGUCuuUCGG--------CCUCCGcGACUUG- -5'
14549 3' -56.8 NC_003521.1 + 165754 0.66 0.93622
Target:  5'- --aCCAuGgcGUCGGAGGCGgUGGGCa -3'
miRNA:   3'- cagGGUcUuuCGGCCUCCGCgACUUG- -5'
14549 3' -56.8 NC_003521.1 + 104941 0.66 0.93622
Target:  5'- aGUCacaAGAGAGCuUGGAGGaGCUGAcgACg -3'
miRNA:   3'- -CAGgg-UCUUUCG-GCCUCCgCGACU--UG- -5'
14549 3' -56.8 NC_003521.1 + 81712 0.66 0.931338
Target:  5'- cGUCCCAgGAGAGCaCGGAGuCGCcccGCu -3'
miRNA:   3'- -CAGGGU-CUUUCG-GCCUCcGCGacuUG- -5'
14549 3' -56.8 NC_003521.1 + 153377 0.66 0.931338
Target:  5'- aGUCCaAGGAcGUCGGugGGGgGCUGGAUg -3'
miRNA:   3'- -CAGGgUCUUuCGGCC--UCCgCGACUUG- -5'
14549 3' -56.8 NC_003521.1 + 87502 0.66 0.931338
Target:  5'- uUCCCcguGAAGGCCGuGAccaugagccGGCacgaGCUGAACu -3'
miRNA:   3'- cAGGGu--CUUUCGGC-CU---------CCG----CGACUUG- -5'
14549 3' -56.8 NC_003521.1 + 100139 0.66 0.926229
Target:  5'- gGUCCUgcgGGAAGGCCGuGGGGCuCUuGAGg -3'
miRNA:   3'- -CAGGG---UCUUUCGGC-CUCCGcGA-CUUg -5'
14549 3' -56.8 NC_003521.1 + 180165 0.66 0.926229
Target:  5'- cGUCCguG-AAGCCGuaGAGGCGUccGGGCu -3'
miRNA:   3'- -CAGGguCuUUCGGC--CUCCGCGa-CUUG- -5'
14549 3' -56.8 NC_003521.1 + 111287 0.66 0.926229
Target:  5'- cUCCCuc-GGGCUGGGGGCaCUGuAGCg -3'
miRNA:   3'- cAGGGucuUUCGGCCUCCGcGAC-UUG- -5'
14549 3' -56.8 NC_003521.1 + 214499 0.66 0.920891
Target:  5'- cUCCCcuGGAGAGCCGGcccuggaaGCGC-GGACa -3'
miRNA:   3'- cAGGG--UCUUUCGGCCuc------CGCGaCUUG- -5'
14549 3' -56.8 NC_003521.1 + 215431 0.66 0.915327
Target:  5'- cUCCguGAagcaGAGCCGcGGGUGCUGGc- -3'
miRNA:   3'- cAGGguCU----UUCGGCcUCCGCGACUug -5'
14549 3' -56.8 NC_003521.1 + 195187 0.66 0.915327
Target:  5'- -cCCCGcGGAGCCGGcGGCGgUGGc- -3'
miRNA:   3'- caGGGUcUUUCGGCCuCCGCgACUug -5'
14549 3' -56.8 NC_003521.1 + 87130 0.66 0.915327
Target:  5'- cGUCCCAaGGAG-CGcGAGGUGUUGGAg -3'
miRNA:   3'- -CAGGGUcUUUCgGC-CUCCGCGACUUg -5'
14549 3' -56.8 NC_003521.1 + 10325 0.66 0.915327
Target:  5'- -aCCCGGAaacuauaauAAGCgUGcGAGGCGUUGAAg -3'
miRNA:   3'- caGGGUCU---------UUCG-GC-CUCCGCGACUUg -5'
14549 3' -56.8 NC_003521.1 + 21 0.67 0.909535
Target:  5'- gGUCCCGGggGGUgGGgGGGUGUUuuuggcggggGGGCa -3'
miRNA:   3'- -CAGGGUCuuUCGgCC-UCCGCGA----------CUUG- -5'
14549 3' -56.8 NC_003521.1 + 240570 0.67 0.909535
Target:  5'- gGUCCCGGggGGUgGGgGGGUGUUuuuggcggggGGGCa -3'
miRNA:   3'- -CAGGGUCuuUCGgCC-UCCGCGA----------CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.