miRNA display CGI


Results 1 - 20 of 335 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14552 3' -54.1 NC_003521.1 + 36821 0.65 0.987075
Target:  5'- -cGGACUCGGGcauGAGCUCGUCguccaugucguccuACGCCUc -3'
miRNA:   3'- ucUUUGGGUCU---UUCGAGCGG--------------UGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 157111 0.66 0.986607
Target:  5'- cGAGGCCCuGGAccccuuggacgcccGCUCGC-GCGUCCa -3'
miRNA:   3'- uCUUUGGGuCUUu-------------CGAGCGgUGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 127688 0.66 0.985962
Target:  5'- -cGggUCCAGAgcgaGAGCacaUCGUCGCGCaCCu -3'
miRNA:   3'- ucUuuGGGUCU----UUCG---AGCGGUGCG-GG- -5'
14552 3' -54.1 NC_003521.1 + 217079 0.66 0.985962
Target:  5'- uAGuAGCCCAGGAacAG-UCGgC-CGCCCa -3'
miRNA:   3'- -UCuUUGGGUCUU--UCgAGCgGuGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 86333 0.66 0.985962
Target:  5'- uGGAugCUGGAGGuCUUGCCgGCGCCg -3'
miRNA:   3'- uCUUugGGUCUUUcGAGCGG-UGCGGg -5'
14552 3' -54.1 NC_003521.1 + 44760 0.66 0.985962
Target:  5'- gAGAcgGACCgCGGAAGGCggcCGgugCugGCCCu -3'
miRNA:   3'- -UCU--UUGG-GUCUUUCGa--GCg--GugCGGG- -5'
14552 3' -54.1 NC_003521.1 + 40699 0.66 0.985962
Target:  5'- gAGAAAgCCGGuGAGaugcaccacaUCGCgGCGCUCg -3'
miRNA:   3'- -UCUUUgGGUCuUUCg---------AGCGgUGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 215281 0.66 0.985962
Target:  5'- cGAGAUgCAG-AGGCagGCCACcGCCa -3'
miRNA:   3'- uCUUUGgGUCuUUCGagCGGUG-CGGg -5'
14552 3' -54.1 NC_003521.1 + 45071 0.66 0.985962
Target:  5'- cGGAAACCCGGAcauCUU-CCGCguGCCCg -3'
miRNA:   3'- -UCUUUGGGUCUuucGAGcGGUG--CGGG- -5'
14552 3' -54.1 NC_003521.1 + 191207 0.66 0.985962
Target:  5'- -----aCCAG-GAGCUCGUCAUGUUCg -3'
miRNA:   3'- ucuuugGGUCuUUCGAGCGGUGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 197699 0.66 0.985962
Target:  5'- ---cGCCCAGcgccGAGcGCUCGCCGCaGCgCu -3'
miRNA:   3'- ucuuUGGGUC----UUU-CGAGCGGUG-CGgG- -5'
14552 3' -54.1 NC_003521.1 + 155836 0.66 0.985962
Target:  5'- uGGugGCgCAGAaccguacgcaGAGCUCGCUgcugACGCUCu -3'
miRNA:   3'- -UCuuUGgGUCU----------UUCGAGCGG----UGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 89157 0.66 0.985962
Target:  5'- -aAGACCCuGGAcGGCUgggccguggGCCugGCCCu -3'
miRNA:   3'- ucUUUGGG-UCUuUCGAg--------CGGugCGGG- -5'
14552 3' -54.1 NC_003521.1 + 99508 0.66 0.985962
Target:  5'- cGAAGCagaAGAGGGCUCcgggGCgC-CGCCCg -3'
miRNA:   3'- uCUUUGgg-UCUUUCGAG----CG-GuGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 138100 0.66 0.985962
Target:  5'- -cAGGCCgAGGucugcguGCUcuaCGUCACGCCCg -3'
miRNA:   3'- ucUUUGGgUCUuu-----CGA---GCGGUGCGGG- -5'
14552 3' -54.1 NC_003521.1 + 176842 0.66 0.985962
Target:  5'- cAGAAagccGgCCAGGAucuGGUuauggCGCCGCGCCa -3'
miRNA:   3'- -UCUU----UgGGUCUU---UCGa----GCGGUGCGGg -5'
14552 3' -54.1 NC_003521.1 + 163365 0.66 0.985962
Target:  5'- uGAAcCgCCAGAAGGagCGCCG-GCCCg -3'
miRNA:   3'- uCUUuG-GGUCUUUCgaGCGGUgCGGG- -5'
14552 3' -54.1 NC_003521.1 + 19337 0.66 0.985962
Target:  5'- ----uCCCGGGGAGCUCcGgCGaggaGCCCu -3'
miRNA:   3'- ucuuuGGGUCUUUCGAG-CgGUg---CGGG- -5'
14552 3' -54.1 NC_003521.1 + 27452 0.66 0.985962
Target:  5'- cGAAuucgGCCguGAgcgccAGGCUgGCCAgGUCCg -3'
miRNA:   3'- uCUU----UGGguCU-----UUCGAgCGGUgCGGG- -5'
14552 3' -54.1 NC_003521.1 + 44399 0.66 0.985962
Target:  5'- --cGACCCGGGcgacAGCgacugucugUGCCGCuGCCCg -3'
miRNA:   3'- ucuUUGGGUCUu---UCGa--------GCGGUG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.