miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14554 5' -57.4 NC_003521.1 + 49228 0.66 0.949251
Target:  5'- aGGCGACgGGcAUCUuacccucuCGGaUCCUGCGc -3'
miRNA:   3'- cCCGCUGgUC-UAGAcu------GCC-AGGACGC- -5'
14554 5' -57.4 NC_003521.1 + 119197 0.66 0.949251
Target:  5'- gGGGCcGCUuGAUCUucuCGGUCUUGCc -3'
miRNA:   3'- -CCCGcUGGuCUAGAcu-GCCAGGACGc -5'
14554 5' -57.4 NC_003521.1 + 29682 0.66 0.945139
Target:  5'- uGGGCGACUGGAg--GAUGaUCCgcUGCGu -3'
miRNA:   3'- -CCCGCUGGUCUagaCUGCcAGG--ACGC- -5'
14554 5' -57.4 NC_003521.1 + 152375 0.66 0.944716
Target:  5'- gGGGCGGCgcgcccucuacucUAGucAUCUGGCGGUgCcGCGc -3'
miRNA:   3'- -CCCGCUG-------------GUC--UAGACUGCCAgGaCGC- -5'
14554 5' -57.4 NC_003521.1 + 97361 0.66 0.940815
Target:  5'- -cGCGAUCuuGAgcacgcgCUGGCGGUCgaGCGg -3'
miRNA:   3'- ccCGCUGGu-CUa------GACUGCCAGgaCGC- -5'
14554 5' -57.4 NC_003521.1 + 199718 0.66 0.940815
Target:  5'- uGGGUGACCAGcaccaccgcgUUGAgCGGUCC-GCc -3'
miRNA:   3'- -CCCGCUGGUCua--------GACU-GCCAGGaCGc -5'
14554 5' -57.4 NC_003521.1 + 102966 0.66 0.940815
Target:  5'- cGGGCGuCgGGGcUCUGGCGGg---GCGg -3'
miRNA:   3'- -CCCGCuGgUCU-AGACUGCCaggaCGC- -5'
14554 5' -57.4 NC_003521.1 + 33650 0.66 0.940815
Target:  5'- gGGGCGGCCAGcaga-GCGGgaUCCaGCGa -3'
miRNA:   3'- -CCCGCUGGUCuagacUGCC--AGGaCGC- -5'
14554 5' -57.4 NC_003521.1 + 102351 0.66 0.936276
Target:  5'- cGGGCGGCagguggCAGAUgUGGCGccgCCgGCGa -3'
miRNA:   3'- -CCCGCUG------GUCUAgACUGCca-GGaCGC- -5'
14554 5' -57.4 NC_003521.1 + 4456 0.66 0.936276
Target:  5'- cGGaGCGAUgCGG--CUGACGGUCUggGCGg -3'
miRNA:   3'- -CC-CGCUG-GUCuaGACUGCCAGGa-CGC- -5'
14554 5' -57.4 NC_003521.1 + 211096 0.66 0.936276
Target:  5'- cGGGgGACUGGAgggaugUUGuuGGUgCUGCGa -3'
miRNA:   3'- -CCCgCUGGUCUa-----GACugCCAgGACGC- -5'
14554 5' -57.4 NC_003521.1 + 183054 0.66 0.931522
Target:  5'- cGGCGAUUgugGGAUCgucgccGuCGGUCCUGUa -3'
miRNA:   3'- cCCGCUGG---UCUAGa-----CuGCCAGGACGc -5'
14554 5' -57.4 NC_003521.1 + 37401 0.66 0.931522
Target:  5'- gGGGCGcCCGGGcCUugugcGACGG-CCUGgGa -3'
miRNA:   3'- -CCCGCuGGUCUaGA-----CUGCCaGGACgC- -5'
14554 5' -57.4 NC_003521.1 + 139619 0.66 0.931522
Target:  5'- cGGUGGCCuucugcuugaAGAUCUcGAUGGaggUCUGCGa -3'
miRNA:   3'- cCCGCUGG----------UCUAGA-CUGCCa--GGACGC- -5'
14554 5' -57.4 NC_003521.1 + 19960 0.66 0.926552
Target:  5'- aGGUGGCCGGG-CUGGCGGUgaucgugaCCUccGUGg -3'
miRNA:   3'- cCCGCUGGUCUaGACUGCCA--------GGA--CGC- -5'
14554 5' -57.4 NC_003521.1 + 167524 0.66 0.926552
Target:  5'- -aGCaGCCAGGUCUGcuCGGcgUCCUGCc -3'
miRNA:   3'- ccCGcUGGUCUAGACu-GCC--AGGACGc -5'
14554 5' -57.4 NC_003521.1 + 85356 0.66 0.926552
Target:  5'- uGGCGgaACCAGAcCUcGACGGgcugCUGCGa -3'
miRNA:   3'- cCCGC--UGGUCUaGA-CUGCCag--GACGC- -5'
14554 5' -57.4 NC_003521.1 + 218728 0.66 0.926043
Target:  5'- cGGGCGAgaagCGGcGUCggGACGGUCCcccaugcUGCGu -3'
miRNA:   3'- -CCCGCUg---GUC-UAGa-CUGCCAGG-------ACGC- -5'
14554 5' -57.4 NC_003521.1 + 45212 0.67 0.921364
Target:  5'- -cGCGACCAG--CUGGCGGgccggCUGCGc -3'
miRNA:   3'- ccCGCUGGUCuaGACUGCCag---GACGC- -5'
14554 5' -57.4 NC_003521.1 + 129195 0.67 0.920834
Target:  5'- uGGUGACCAugaugguGGUCUGGCGcguggugggcaGUCCgGCGc -3'
miRNA:   3'- cCCGCUGGU-------CUAGACUGC-----------CAGGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.