miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14555 3' -55.5 NC_003521.1 + 115828 0.66 0.975708
Target:  5'- gGUGGCUcagcaGGCGCuggCUCagGCGGGcGGCGCa -3'
miRNA:   3'- aCAUUGA-----CUGCG---GAGg-CGCCU-CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 101861 0.66 0.975708
Target:  5'- aUGgcgGACUG-CGUCaugggUCCGCaGGGGAUGUa -3'
miRNA:   3'- -ACa--UUGACuGCGG-----AGGCG-CCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 130198 0.66 0.975708
Target:  5'- --cGGCgaGAUGCCgaugcCCGCGGuacAGAUGCa -3'
miRNA:   3'- acaUUGa-CUGCGGa----GGCGCC---UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 127945 0.66 0.973188
Target:  5'- --cGGCUGACGUCgucggccagCCGCGGGaGCaGCu -3'
miRNA:   3'- acaUUGACUGCGGa--------GGCGCCUcUG-CG- -5'
14555 3' -55.5 NC_003521.1 + 180853 0.66 0.973188
Target:  5'- gGUAGCUGACGUCgcggauuuguUCCGCGccGGGCu- -3'
miRNA:   3'- aCAUUGACUGCGG----------AGGCGCc-UCUGcg -5'
14555 3' -55.5 NC_003521.1 + 145432 0.66 0.973188
Target:  5'- ---uGCUgGGCGCCUCgGUGGAccugugcuucGGCGUg -3'
miRNA:   3'- acauUGA-CUGCGGAGgCGCCU----------CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 53341 0.66 0.973188
Target:  5'- cGUGACcaccACGCCggcgcggCgGCGGAGGgGCc -3'
miRNA:   3'- aCAUUGac--UGCGGa------GgCGCCUCUgCG- -5'
14555 3' -55.5 NC_003521.1 + 66875 0.66 0.973188
Target:  5'- gGUGACUGugGCCgagaCCaGUgacgaGGAGGCa- -3'
miRNA:   3'- aCAUUGACugCGGa---GG-CG-----CCUCUGcg -5'
14555 3' -55.5 NC_003521.1 + 100817 0.66 0.973188
Target:  5'- cUGcGACUGugauUGUUg-CGCGGGGACGCa -3'
miRNA:   3'- -ACaUUGACu---GCGGagGCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 124284 0.66 0.972926
Target:  5'- --cGGCUGACGaUCUCCagaaagcGCGGcgagguGACGCa -3'
miRNA:   3'- acaUUGACUGC-GGAGG-------CGCCu-----CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 133340 0.66 0.970484
Target:  5'- aGUGugcuCUGGgCGCCggaCGUGGAGAUcaGCa -3'
miRNA:   3'- aCAUu---GACU-GCGGag-GCGCCUCUG--CG- -5'
14555 3' -55.5 NC_003521.1 + 238945 0.66 0.970484
Target:  5'- gGUAcCUG-CGCCagCUGCGGuauuagAGGCGCc -3'
miRNA:   3'- aCAUuGACuGCGGa-GGCGCC------UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 160337 0.66 0.970484
Target:  5'- cGgcGCgGugGCCUCCGuCGucgaGGGCGUc -3'
miRNA:   3'- aCauUGaCugCGGAGGC-GCc---UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 53971 0.66 0.970484
Target:  5'- cGU-GCUGcACGCCgCCGCuGGGcCGCc -3'
miRNA:   3'- aCAuUGAC-UGCGGaGGCGcCUCuGCG- -5'
14555 3' -55.5 NC_003521.1 + 38718 0.66 0.970484
Target:  5'- gGUAcCUG-CGCCagCUGCGGuauuagAGGCGCc -3'
miRNA:   3'- aCAUuGACuGCGGa-GGCGCC------UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 75986 0.66 0.96877
Target:  5'- aGU--CUGGCGCCggCCGCcGGuuccuccucccccgcGGGCGCu -3'
miRNA:   3'- aCAuuGACUGCGGa-GGCG-CC---------------UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 127988 0.66 0.967589
Target:  5'- cGgccaUGACGCCcgccacggaaUCCGgGGGGuCGCg -3'
miRNA:   3'- aCauugACUGCGG----------AGGCgCCUCuGCG- -5'
14555 3' -55.5 NC_003521.1 + 118567 0.66 0.967589
Target:  5'- aUGUAAgUaGACGCCcagcgaCGUGGcGGCGCu -3'
miRNA:   3'- -ACAUUgA-CUGCGGag----GCGCCuCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 119610 0.66 0.967589
Target:  5'- cUGgaGCUGcGCGCC-CUGCGcGAGAcCGUg -3'
miRNA:   3'- -ACauUGAC-UGCGGaGGCGC-CUCU-GCG- -5'
14555 3' -55.5 NC_003521.1 + 180504 0.66 0.967589
Target:  5'- --cGGCUGcaucaGCGCCgUCUGCGcGuAGGCGCu -3'
miRNA:   3'- acaUUGAC-----UGCGG-AGGCGC-C-UCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.