miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14555 3' -55.5 NC_003521.1 + 187041 1.12 0.003393
Target:  5'- uUGUAACUGACGCCUCCGCGGAGACGCg -3'
miRNA:   3'- -ACAUUGACUGCGGAGGCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 53767 0.81 0.307441
Target:  5'- --aAGCUGacggagucGCGUCUCCGCGGAGGCGUc -3'
miRNA:   3'- acaUUGAC--------UGCGGAGGCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 152385 0.76 0.570916
Target:  5'- aGgcgGAC-GACGUCUCCcUGGAGACGCg -3'
miRNA:   3'- aCa--UUGaCUGCGGAGGcGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 44169 0.75 0.620148
Target:  5'- --cAGCUGGCGCCgucgguacUCCGCGaGAG-CGCa -3'
miRNA:   3'- acaUUGACUGCGG--------AGGCGC-CUCuGCG- -5'
14555 3' -55.5 NC_003521.1 + 159831 0.74 0.639947
Target:  5'- cGUGA--GGCGCUg-CGCGGAGGCGCg -3'
miRNA:   3'- aCAUUgaCUGCGGagGCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 235131 0.74 0.649841
Target:  5'- gGUGAC-GGCGCCcguuccCCGCGGAcgGGCGCc -3'
miRNA:   3'- aCAUUGaCUGCGGa-----GGCGCCU--CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 76379 0.74 0.679415
Target:  5'- cGUGACgGcCGCggCCGCGGuGGCGCu -3'
miRNA:   3'- aCAUUGaCuGCGgaGGCGCCuCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 49120 0.73 0.68921
Target:  5'- gGUGACcgcGGCGCCgcugCUGCGGGGACu- -3'
miRNA:   3'- aCAUUGa--CUGCGGa---GGCGCCUCUGcg -5'
14555 3' -55.5 NC_003521.1 + 95557 0.73 0.698961
Target:  5'- --gAGCUGGcCGCCgaggCCGaGGAGGCGCc -3'
miRNA:   3'- acaUUGACU-GCGGa---GGCgCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 117520 0.73 0.698961
Target:  5'- cUGgAACUgGACGCCgagucgcCCGCGGAccuGACGCu -3'
miRNA:   3'- -ACaUUGA-CUGCGGa------GGCGCCU---CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 35486 0.73 0.718298
Target:  5'- --cAGCUGcCGCCgCCGaGGAGGCGCc -3'
miRNA:   3'- acaUUGACuGCGGaGGCgCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 24150 0.73 0.727867
Target:  5'- -aUAACgu-CGCCgcgaccaCCGCGGAGAUGCg -3'
miRNA:   3'- acAUUGacuGCGGa------GGCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 44311 0.72 0.737358
Target:  5'- gGUuGCUGugGCCgCUGCGG-GACGa -3'
miRNA:   3'- aCAuUGACugCGGaGGCGCCuCUGCg -5'
14555 3' -55.5 NC_003521.1 + 142014 0.72 0.756077
Target:  5'- --cAGCUGcaACGCCUCgaCGUGGAcGGCGCg -3'
miRNA:   3'- acaUUGAC--UGCGGAG--GCGCCU-CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 226378 0.72 0.765286
Target:  5'- --cGGCUGACGCCgCCGCaGGGcCGUg -3'
miRNA:   3'- acaUUGACUGCGGaGGCGcCUCuGCG- -5'
14555 3' -55.5 NC_003521.1 + 130771 0.72 0.783365
Target:  5'- --gGACUGACGCUgcugUCgGCGGGGucacCGCa -3'
miRNA:   3'- acaUUGACUGCGG----AGgCGCCUCu---GCG- -5'
14555 3' -55.5 NC_003521.1 + 100679 0.71 0.792217
Target:  5'- gGUGAUaguggUGAUGCUgaUGCGGAGGCGCc -3'
miRNA:   3'- aCAUUG-----ACUGCGGagGCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 209523 0.71 0.792217
Target:  5'- gGUGACcGuCGCCgcugCCGCGGuuAUGCg -3'
miRNA:   3'- aCAUUGaCuGCGGa---GGCGCCucUGCG- -5'
14555 3' -55.5 NC_003521.1 + 171496 0.71 0.800935
Target:  5'- aGUGACgGACGCUgacaCUGUGGAGACc- -3'
miRNA:   3'- aCAUUGaCUGCGGa---GGCGCCUCUGcg -5'
14555 3' -55.5 NC_003521.1 + 105446 0.71 0.801799
Target:  5'- gGU--UUGGCGCCcgcgggcgauaaccgCCGCGGAGACGg -3'
miRNA:   3'- aCAuuGACUGCGGa--------------GGCGCCUCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.