miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14555 3' -55.5 NC_003521.1 + 127988 0.66 0.967589
Target:  5'- cGgccaUGACGCCcgccacggaaUCCGgGGGGuCGCg -3'
miRNA:   3'- aCauugACUGCGG----------AGGCgCCUCuGCG- -5'
14555 3' -55.5 NC_003521.1 + 18719 0.66 0.967289
Target:  5'- cUGUGGCUGcCGCUggCgGCGGcgaucguggcggcGGugGCg -3'
miRNA:   3'- -ACAUUGACuGCGGa-GgCGCC-------------UCugCG- -5'
14555 3' -55.5 NC_003521.1 + 123761 0.66 0.967289
Target:  5'- cGUGACcGcCGgCUCCGCGGccgccucGGGCGa -3'
miRNA:   3'- aCAUUGaCuGCgGAGGCGCC-------UCUGCg -5'
14555 3' -55.5 NC_003521.1 + 115499 0.66 0.965759
Target:  5'- cGUGucgcuCUGugGCCggacccaccgccgcgUCCGCGaacGACGCg -3'
miRNA:   3'- aCAUu----GACugCGG---------------AGGCGCcu-CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 14480 0.66 0.9645
Target:  5'- ------cGGCGCUacCCGCGGGGcGCGCg -3'
miRNA:   3'- acauugaCUGCGGa-GGCGCCUC-UGCG- -5'
14555 3' -55.5 NC_003521.1 + 90158 0.66 0.9645
Target:  5'- --cAGC-GGCGCCgCCGCcGGAGAgcCGCc -3'
miRNA:   3'- acaUUGaCUGCGGaGGCG-CCUCU--GCG- -5'
14555 3' -55.5 NC_003521.1 + 52805 0.66 0.9645
Target:  5'- -cUGAUguccGACGCCUgCGaGGAGACGg -3'
miRNA:   3'- acAUUGa---CUGCGGAgGCgCCUCUGCg -5'
14555 3' -55.5 NC_003521.1 + 169206 0.66 0.9645
Target:  5'- --gAGCUGAuCGCCUUCGggcCGGAGaACGa -3'
miRNA:   3'- acaUUGACU-GCGGAGGC---GCCUC-UGCg -5'
14555 3' -55.5 NC_003521.1 + 12214 0.66 0.9645
Target:  5'- gGUGAgaUGACGCggccccucaugCUCUGCGGGcACGCc -3'
miRNA:   3'- aCAUUg-ACUGCG-----------GAGGCGCCUcUGCG- -5'
14555 3' -55.5 NC_003521.1 + 109612 0.66 0.9645
Target:  5'- cUGUcuCUGGCGCCggCCccucucgccguaGCGGgcgaacaugAGACGCg -3'
miRNA:   3'- -ACAuuGACUGCGGa-GG------------CGCC---------UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 157979 0.66 0.9645
Target:  5'- gGUAGC-GACGCCgccgcCCGCGGcGAUuuGUg -3'
miRNA:   3'- aCAUUGaCUGCGGa----GGCGCCuCUG--CG- -5'
14555 3' -55.5 NC_003521.1 + 77506 0.66 0.9645
Target:  5'- aGUGccGCUcGCGCCgcugaCCGUGGAcACGCc -3'
miRNA:   3'- aCAU--UGAcUGCGGa----GGCGCCUcUGCG- -5'
14555 3' -55.5 NC_003521.1 + 142764 0.66 0.9645
Target:  5'- gGUGACca--GCgUCCGCGGcGGCGUc -3'
miRNA:   3'- aCAUUGacugCGgAGGCGCCuCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 46811 0.66 0.9645
Target:  5'- cUGga--UGACGCCgCCGCcGGugacGACGCu -3'
miRNA:   3'- -ACauugACUGCGGaGGCG-CCu---CUGCG- -5'
14555 3' -55.5 NC_003521.1 + 166477 0.66 0.96418
Target:  5'- cGUAGCcGcgcagcaGCGCCaUCCaGCGG-GGCGCc -3'
miRNA:   3'- aCAUUGaC-------UGCGG-AGG-CGCCuCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 206970 0.67 0.96255
Target:  5'- cGUGGCguuccacgaagcgaaUGACGCC-CCagGCGGguccuucgcAGACGCa -3'
miRNA:   3'- aCAUUG---------------ACUGCGGaGG--CGCC---------UCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 18644 0.67 0.961547
Target:  5'- cGUGGCgUGGgGCCgcacggaccugcuggCCaCGGGGGCGCu -3'
miRNA:   3'- aCAUUG-ACUgCGGa--------------GGcGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 117190 0.67 0.961209
Target:  5'- cGUcGCUGcCGCCgcccgaggCgGUGGAGAUGUc -3'
miRNA:   3'- aCAuUGACuGCGGa-------GgCGCCUCUGCG- -5'
14555 3' -55.5 NC_003521.1 + 62215 0.67 0.961209
Target:  5'- --aGGCguugGACGCCgugCUGCaGGAGgGCGCc -3'
miRNA:   3'- acaUUGa---CUGCGGa--GGCG-CCUC-UGCG- -5'
14555 3' -55.5 NC_003521.1 + 150792 0.67 0.961209
Target:  5'- --gGGCgGGCGCgagCCGCcaGGGGGCGCu -3'
miRNA:   3'- acaUUGaCUGCGga-GGCG--CCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.