miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14555 5' -57.5 NC_003521.1 + 217624 0.66 0.921961
Target:  5'- uCGGCcgccaUCUCCUCGgcguggucGGGGGGcAUGGCg- -3'
miRNA:   3'- -GUCGa----AGAGGAGC--------UCCCCC-UGCUGau -5'
14555 5' -57.5 NC_003521.1 + 43580 0.66 0.898758
Target:  5'- aAGCaccgCUCCUCGGGcGGcgacgaGGACGACg- -3'
miRNA:   3'- gUCGaa--GAGGAGCUC-CC------CCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 73500 0.67 0.885848
Target:  5'- gAGCUcCUCCUCGAcccggaggauguGGuGGGCGACg- -3'
miRNA:   3'- gUCGAaGAGGAGCU------------CCcCCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 72518 0.67 0.885848
Target:  5'- gGGuCUUCUCCUCcgagcugcgGAGGcGGcGGCGACg- -3'
miRNA:   3'- gUC-GAAGAGGAG---------CUCC-CC-CUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 58986 0.67 0.872099
Target:  5'- uCAGCcgCUagagGAGGGGGACGACg- -3'
miRNA:   3'- -GUCGaaGAggagCUCCCCCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 120482 0.67 0.864921
Target:  5'- aGGUgUCUCCgcCGAgaggcgcguguGGGGGACGACg- -3'
miRNA:   3'- gUCGaAGAGGa-GCU-----------CCCCCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 164855 0.68 0.817934
Target:  5'- gGGCcgCUCCUCGucGGGGGUGugUAa -3'
miRNA:   3'- gUCGaaGAGGAGCucCCCCUGCugAU- -5'
14555 5' -57.5 NC_003521.1 + 113585 0.69 0.800935
Target:  5'- gGGCUgggCCUCGGGggcaacGGGGGCGGCg- -3'
miRNA:   3'- gUCGAagaGGAGCUC------CCCCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 84838 0.69 0.800069
Target:  5'- gCAGCgcCUCCUCGgugguguAGGGGGA-GACg- -3'
miRNA:   3'- -GUCGaaGAGGAGC-------UCCCCCUgCUGau -5'
14555 5' -57.5 NC_003521.1 + 127765 0.69 0.774385
Target:  5'- gCAGCgUCUCCUCGuAGucGGGCGGCg- -3'
miRNA:   3'- -GUCGaAGAGGAGC-UCccCCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 139234 0.72 0.60137
Target:  5'- gAGCUaccaccuguacggggCUCCUCGcgcggagcGGGGGGACGACg- -3'
miRNA:   3'- gUCGAa--------------GAGGAGC--------UCCCCCUGCUGau -5'
14555 5' -57.5 NC_003521.1 + 93547 0.73 0.551464
Target:  5'- gAGCUaUCUCCUCGAGGaGGGuuaGGCg- -3'
miRNA:   3'- gUCGA-AGAGGAGCUCC-CCCug-CUGau -5'
14555 5' -57.5 NC_003521.1 + 170859 0.74 0.485262
Target:  5'- uCGGCUUCUCCgCGGGGGcGGGCG-Cg- -3'
miRNA:   3'- -GUCGAAGAGGaGCUCCC-CCUGCuGau -5'
14555 5' -57.5 NC_003521.1 + 187075 1.06 0.005357
Target:  5'- uCAGCUUCUCCUCGAGGGGGACGACUAc -3'
miRNA:   3'- -GUCGAAGAGGAGCUCCCCCUGCUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.