miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14557 3' -57.2 NC_003521.1 + 62252 0.66 0.934646
Target:  5'- gGAC-GCGCGGCUGGAgaaGGACCu----- -3'
miRNA:   3'- -CUGaCGUGCCGACCU---UCUGGcuccug -5'
14557 3' -57.2 NC_003521.1 + 91257 0.66 0.934646
Target:  5'- aGAUggGCACgGGCgGGAA-ACCGGGGAa -3'
miRNA:   3'- -CUGa-CGUG-CCGaCCUUcUGGCUCCUg -5'
14557 3' -57.2 NC_003521.1 + 172169 0.66 0.934646
Target:  5'- cGCUcUGCGGCUGGAAGA-UGGGGuCg -3'
miRNA:   3'- cUGAcGUGCCGACCUUCUgGCUCCuG- -5'
14557 3' -57.2 NC_003521.1 + 148383 0.66 0.934646
Target:  5'- ---aGCGgGGUgcgGGGAGGCUGGGGGg -3'
miRNA:   3'- cugaCGUgCCGa--CCUUCUGGCUCCUg -5'
14557 3' -57.2 NC_003521.1 + 237394 0.66 0.934646
Target:  5'- cGGCgucgGCAUGGC-GGggGuCUGAGuGGCc -3'
miRNA:   3'- -CUGa---CGUGCCGaCCuuCuGGCUC-CUG- -5'
14557 3' -57.2 NC_003521.1 + 234751 0.66 0.93172
Target:  5'- -uCUGCAaCGGCUGGcGugaucacgcccugcgGGGCCGcuGGGGCa -3'
miRNA:   3'- cuGACGU-GCCGACC-U---------------UCUGGC--UCCUG- -5'
14557 3' -57.2 NC_003521.1 + 7988 0.66 0.929725
Target:  5'- ---cGCgGCGGCgggGGAGGuACCG-GGGCa -3'
miRNA:   3'- cugaCG-UGCCGa--CCUUC-UGGCuCCUG- -5'
14557 3' -57.2 NC_003521.1 + 185332 0.66 0.92458
Target:  5'- ---cGCcUGGCUGGAGcACCagGAGGACg -3'
miRNA:   3'- cugaCGuGCCGACCUUcUGG--CUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 101421 0.66 0.92458
Target:  5'- ---cGUGCGGCUGGAAGAgcaguaCGuuGGGCg -3'
miRNA:   3'- cugaCGUGCCGACCUUCUg-----GCu-CCUG- -5'
14557 3' -57.2 NC_003521.1 + 112051 0.66 0.924053
Target:  5'- uACUGCgACGccuGCUGGAGGACgccgcggUGGGGAUc -3'
miRNA:   3'- cUGACG-UGC---CGACCUUCUG-------GCUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 160306 0.66 0.91921
Target:  5'- aGGCgguggGCACGGCcaucGGA--GCCGuGGGCg -3'
miRNA:   3'- -CUGa----CGUGCCGa---CCUucUGGCuCCUG- -5'
14557 3' -57.2 NC_003521.1 + 18733 0.66 0.91921
Target:  5'- cGCUGC-CGGCgcugcagGGcGGGCUguggGAGGACa -3'
miRNA:   3'- cUGACGuGCCGa------CCuUCUGG----CUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 89681 0.66 0.91921
Target:  5'- gGACaGCAgGaGgaGGAAGaACgGAGGACa -3'
miRNA:   3'- -CUGaCGUgC-CgaCCUUC-UGgCUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 67658 0.66 0.918661
Target:  5'- uGCUGCACugccuguGGCUGGAgcugaagcccaAGuacGCCGAGGuCu -3'
miRNA:   3'- cUGACGUG-------CCGACCU-----------UC---UGGCUCCuG- -5'
14557 3' -57.2 NC_003521.1 + 22421 0.66 0.913617
Target:  5'- uGCUGCGCGGCgu---GGCCGAGuACc -3'
miRNA:   3'- cUGACGUGCCGaccuuCUGGCUCcUG- -5'
14557 3' -57.2 NC_003521.1 + 92092 0.66 0.913617
Target:  5'- cACUGCACgaugGGCacGGAGGCCucGAGGAUg -3'
miRNA:   3'- cUGACGUG----CCGacCUUCUGG--CUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 29383 0.66 0.913617
Target:  5'- cGACcGCGaGGCcgaGGAGGACgacgaCGAGGACa -3'
miRNA:   3'- -CUGaCGUgCCGa--CCUUCUG-----GCUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 73132 0.66 0.9078
Target:  5'- uGCUGCACGGC-GGggGcAgCGGcGGCg -3'
miRNA:   3'- cUGACGUGCCGaCCuuC-UgGCUcCUG- -5'
14557 3' -57.2 NC_003521.1 + 57297 0.66 0.9078
Target:  5'- --gUGCGCGGCgacUGGuGGAUaagCGAGGGCc -3'
miRNA:   3'- cugACGUGCCG---ACCuUCUG---GCUCCUG- -5'
14557 3' -57.2 NC_003521.1 + 73 0.66 0.9078
Target:  5'- cGGCggcGUGCGGCgGGccGGCCGGucGGACg -3'
miRNA:   3'- -CUGa--CGUGCCGaCCuuCUGGCU--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.