miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14557 5' -56.9 NC_003521.1 + 203498 0.66 0.939346
Target:  5'- -aGCguacGUCGAUCUCUACCGUCu---- -3'
miRNA:   3'- uaCGa---CAGCUAGAGGUGGCGGcagag -5'
14557 5' -56.9 NC_003521.1 + 154467 0.66 0.939346
Target:  5'- -cGCUGUUGGUCaccggCACCGCCGg--- -3'
miRNA:   3'- uaCGACAGCUAGag---GUGGCGGCagag -5'
14557 5' -56.9 NC_003521.1 + 117781 0.66 0.939346
Target:  5'- -cGCUG-CGGa-UCUAUCGCCGUUUCu -3'
miRNA:   3'- uaCGACaGCUagAGGUGGCGGCAGAG- -5'
14557 5' -56.9 NC_003521.1 + 104701 0.66 0.934629
Target:  5'- -gGCggcGUCGAcgugccCUCgACCGCgGUCUCu -3'
miRNA:   3'- uaCGa--CAGCUa-----GAGgUGGCGgCAGAG- -5'
14557 5' -56.9 NC_003521.1 + 122610 0.66 0.934629
Target:  5'- uUGCUGUUG--UUCCugCGUCGgCUCg -3'
miRNA:   3'- uACGACAGCuaGAGGugGCGGCaGAG- -5'
14557 5' -56.9 NC_003521.1 + 183233 0.66 0.934629
Target:  5'- -cGCUGacUCGGggUUCGCCGCCGgcgccCUCg -3'
miRNA:   3'- uaCGAC--AGCUagAGGUGGCGGCa----GAG- -5'
14557 5' -56.9 NC_003521.1 + 97416 0.66 0.929686
Target:  5'- -cGCcGUCGGuaccaUCUCC-CCuCCGUCUCc -3'
miRNA:   3'- uaCGaCAGCU-----AGAGGuGGcGGCAGAG- -5'
14557 5' -56.9 NC_003521.1 + 197375 0.66 0.929686
Target:  5'- -cGCUGUgaGAguUCcagggCCGCCGCCGcCUCc -3'
miRNA:   3'- uaCGACAg-CU--AGa----GGUGGCGGCaGAG- -5'
14557 5' -56.9 NC_003521.1 + 188055 0.66 0.929686
Target:  5'- -gGUUGUCGAUg-CCgcgguagaGCCGCuCGUCUCc -3'
miRNA:   3'- uaCGACAGCUAgaGG--------UGGCG-GCAGAG- -5'
14557 5' -56.9 NC_003521.1 + 78602 0.66 0.929686
Target:  5'- -cGCcGUCGGcgCUaCCACCccCCGUCUCg -3'
miRNA:   3'- uaCGaCAGCUa-GA-GGUGGc-GGCAGAG- -5'
14557 5' -56.9 NC_003521.1 + 128785 0.66 0.924517
Target:  5'- gAUGCUGUCGGUggcggcCUCCACCagGCgCGUg-- -3'
miRNA:   3'- -UACGACAGCUA------GAGGUGG--CG-GCAgag -5'
14557 5' -56.9 NC_003521.1 + 120808 0.66 0.924517
Target:  5'- cUGCUGUCGAUgUCCGaguccUCGUCGguaucCUCc -3'
miRNA:   3'- uACGACAGCUAgAGGU-----GGCGGCa----GAG- -5'
14557 5' -56.9 NC_003521.1 + 235245 0.66 0.919122
Target:  5'- cGUGUUcgacagCGAUUUCCACCGCCGa--- -3'
miRNA:   3'- -UACGAca----GCUAGAGGUGGCGGCagag -5'
14557 5' -56.9 NC_003521.1 + 73303 0.66 0.919122
Target:  5'- -cGuCUGUCG-UCaCCACCGCCGaCUUu -3'
miRNA:   3'- uaC-GACAGCuAGaGGUGGCGGCaGAG- -5'
14557 5' -56.9 NC_003521.1 + 101354 0.66 0.91857
Target:  5'- cGUGCUcaaggagGUCGAgUUCCGCUGCCG-CUa -3'
miRNA:   3'- -UACGA-------CAGCUaGAGGUGGCGGCaGAg -5'
14557 5' -56.9 NC_003521.1 + 94155 0.66 0.9135
Target:  5'- cUGCgGUCGG-CUUCGuuGCCGUcCUCc -3'
miRNA:   3'- uACGaCAGCUaGAGGUggCGGCA-GAG- -5'
14557 5' -56.9 NC_003521.1 + 123903 0.66 0.912925
Target:  5'- cGUGCUGUCGGcgcgcggcgcuguUCUCCACCaguugcagcggcGCCGa--- -3'
miRNA:   3'- -UACGACAGCU-------------AGAGGUGG------------CGGCagag -5'
14557 5' -56.9 NC_003521.1 + 5215 0.66 0.912925
Target:  5'- -cGCgGUCGggCUCCGCCcgaguccGCC-UCUCg -3'
miRNA:   3'- uaCGaCAGCuaGAGGUGG-------CGGcAGAG- -5'
14557 5' -56.9 NC_003521.1 + 223358 0.67 0.907653
Target:  5'- gGUGCcGUCGucUCUCCuccgagcgcuGCCGCgGUUUCu -3'
miRNA:   3'- -UACGaCAGCu-AGAGG----------UGGCGgCAGAG- -5'
14557 5' -56.9 NC_003521.1 + 57986 0.67 0.907653
Target:  5'- cUGCUGUUG-UCagCGCCGCCGaUCg- -3'
miRNA:   3'- uACGACAGCuAGagGUGGCGGC-AGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.