miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1456 3' -52.4 NC_001335.1 + 37076 0.66 0.834668
Target:  5'- --cGggGCCCcuUCACCGAGGucgcugagugaGCAagcGCAu -3'
miRNA:   3'- guaCuuCGGGu-AGUGGUUCC-----------CGU---UGU- -5'
1456 3' -52.4 NC_001335.1 + 43696 0.66 0.834668
Target:  5'- -cUGAGGUCUAcgagaaggcucUgGCCGAGGGCcGCGa -3'
miRNA:   3'- guACUUCGGGU-----------AgUGGUUCCCGuUGU- -5'
1456 3' -52.4 NC_001335.1 + 41901 0.66 0.825293
Target:  5'- gGUGggGCCCAUCGuguugcCCAGGauCAGCc -3'
miRNA:   3'- gUACuuCGGGUAGU------GGUUCccGUUGu -5'
1456 3' -52.4 NC_001335.1 + 25983 0.66 0.825293
Target:  5'- cCGUGGcgacgagcgucAGgCCGUCgaccACCAAGGGCAcCAu -3'
miRNA:   3'- -GUACU-----------UCgGGUAG----UGGUUCCCGUuGU- -5'
1456 3' -52.4 NC_001335.1 + 16501 0.66 0.822437
Target:  5'- --cGAGGCCCGagGCCAcguucugcagguugGGGGUGAUc -3'
miRNA:   3'- guaCUUCGGGUagUGGU--------------UCCCGUUGu -5'
1456 3' -52.4 NC_001335.1 + 10874 0.66 0.805896
Target:  5'- gAUGAAGCgUAcguucagucgcuUCGCCAGGaGGCuGCAg -3'
miRNA:   3'- gUACUUCGgGU------------AGUGGUUC-CCGuUGU- -5'
1456 3' -52.4 NC_001335.1 + 17743 0.66 0.805896
Target:  5'- gCAUGGaggcaggguucaAGCCCGUCAUCGAacGGGCc--- -3'
miRNA:   3'- -GUACU------------UCGGGUAGUGGUU--CCCGuugu -5'
1456 3' -52.4 NC_001335.1 + 15923 0.66 0.805896
Target:  5'- gAUGcGGCCCAg-GCCAAGGcCGACu -3'
miRNA:   3'- gUACuUCGGGUagUGGUUCCcGUUGu -5'
1456 3' -52.4 NC_001335.1 + 31905 0.66 0.795895
Target:  5'- gGUGGAGCUUgaacagaGCCGGGGGCAGa- -3'
miRNA:   3'- gUACUUCGGGuag----UGGUUCCCGUUgu -5'
1456 3' -52.4 NC_001335.1 + 39310 0.66 0.795895
Target:  5'- --aGGAcGCgCGU-GCCGAGGGCGGCGa -3'
miRNA:   3'- guaCUU-CGgGUAgUGGUUCCCGUUGU- -5'
1456 3' -52.4 NC_001335.1 + 7318 0.66 0.792859
Target:  5'- aAUGAAGgCCAcgcgauggcagaggUCAUCGAaGGCAACAu -3'
miRNA:   3'- gUACUUCgGGU--------------AGUGGUUcCCGUUGU- -5'
1456 3' -52.4 NC_001335.1 + 16204 0.67 0.775353
Target:  5'- uGUGAGGCCCAggaacgacUUGCCAAGGuGUuguACu -3'
miRNA:   3'- gUACUUCGGGU--------AGUGGUUCC-CGu--UGu -5'
1456 3' -52.4 NC_001335.1 + 6323 0.67 0.764834
Target:  5'- --gGAuGCCCAUCGuguCCGA-GGCAGCGa -3'
miRNA:   3'- guaCUuCGGGUAGU---GGUUcCCGUUGU- -5'
1456 3' -52.4 NC_001335.1 + 17218 0.67 0.761649
Target:  5'- --cGAGGgCCGUCGCCAgcgccgggaugugcGGGGCcaGACu -3'
miRNA:   3'- guaCUUCgGGUAGUGGU--------------UCCCG--UUGu -5'
1456 3' -52.4 NC_001335.1 + 20696 0.67 0.754169
Target:  5'- --cGAGGacaUCGUCACCGGacuGGGCGACu -3'
miRNA:   3'- guaCUUCg--GGUAGUGGUU---CCCGUUGu -5'
1456 3' -52.4 NC_001335.1 + 5568 0.67 0.754169
Target:  5'- --cGAuGCCCAgcagUGCC-GGGGCGGCGg -3'
miRNA:   3'- guaCUuCGGGUa---GUGGuUCCCGUUGU- -5'
1456 3' -52.4 NC_001335.1 + 9495 0.67 0.732446
Target:  5'- --aGAGGCCaugcggAUCGCCuaccggaucaugAAGGGCGGCGa -3'
miRNA:   3'- guaCUUCGGg-----UAGUGG------------UUCCCGUUGU- -5'
1456 3' -52.4 NC_001335.1 + 43495 0.67 0.732446
Target:  5'- --aGAAGUUCAUCGCguggcggaaggaCAAGGGcCAGCAg -3'
miRNA:   3'- guaCUUCGGGUAGUG------------GUUCCC-GUUGU- -5'
1456 3' -52.4 NC_001335.1 + 17471 0.68 0.699079
Target:  5'- --cGGAGCCCAgcagaucgCugCGAaGGCAGCGg -3'
miRNA:   3'- guaCUUCGGGUa-------GugGUUcCCGUUGU- -5'
1456 3' -52.4 NC_001335.1 + 50737 0.69 0.65366
Target:  5'- ---cAGGCCCAgcgacgagucgUCgGCCGGGGGCGGCGc -3'
miRNA:   3'- guacUUCGGGU-----------AG-UGGUUCCCGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.