miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1456 5' -57.8 NC_001335.1 + 30933 0.66 0.575222
Target:  5'- aACUGcUCGCUgCCCugAuugGGAUCGCGGu -3'
miRNA:   3'- -UGGU-AGCGGgGGGugU---UCUAGCGCUg -5'
1456 5' -57.8 NC_001335.1 + 35576 0.66 0.564468
Target:  5'- uGCCcuuGUCGUCCUucuCCACGccagccguGAUCGCGAUg -3'
miRNA:   3'- -UGG---UAGCGGGG---GGUGUu-------CUAGCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 7294 0.66 0.553767
Target:  5'- gGCCAagGCCCCgaCgGCAAGGUcaaugaaggccaCGCGAUg -3'
miRNA:   3'- -UGGUagCGGGG--GgUGUUCUA------------GCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 47485 0.66 0.553767
Target:  5'- gGCCAcCGCCCUuaccuCCACGgcgGGAguacucgcgguUCGCGGCc -3'
miRNA:   3'- -UGGUaGCGGGG-----GGUGU---UCU-----------AGCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 40758 0.66 0.553767
Target:  5'- gAUCAUCGCCa-CCGCAcucaucgccGGAUCgGCGAUc -3'
miRNA:   3'- -UGGUAGCGGggGGUGU---------UCUAG-CGCUG- -5'
1456 5' -57.8 NC_001335.1 + 2266 0.66 0.553767
Target:  5'- gACCcUCGCCaccgCCCCACu---UCGUGGCc -3'
miRNA:   3'- -UGGuAGCGG----GGGGUGuucuAGCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 8258 0.66 0.543127
Target:  5'- cGCCAUCGCgaUUCGCAAGGUCaCGAa -3'
miRNA:   3'- -UGGUAGCGggGGGUGUUCUAGcGCUg -5'
1456 5' -57.8 NC_001335.1 + 6549 0.67 0.511643
Target:  5'- gGCCAUCGCgauuCCCUC-CcAGAUCG-GACg -3'
miRNA:   3'- -UGGUAGCG----GGGGGuGuUCUAGCgCUG- -5'
1456 5' -57.8 NC_001335.1 + 15218 0.67 0.501315
Target:  5'- gUCGUCGUCCUCUuCGAGGUCGgGGa -3'
miRNA:   3'- uGGUAGCGGGGGGuGUUCUAGCgCUg -5'
1456 5' -57.8 NC_001335.1 + 11478 0.67 0.491079
Target:  5'- uCCAUCGUCCagcaguucgCCCAgAAGAUCcCGAUg -3'
miRNA:   3'- uGGUAGCGGG---------GGGUgUUCUAGcGCUG- -5'
1456 5' -57.8 NC_001335.1 + 27138 0.67 0.488027
Target:  5'- aACCcgUGCCgCCCuCACAggcggacaggcucaGGGUgGCGGCa -3'
miRNA:   3'- -UGGuaGCGG-GGG-GUGU--------------UCUAgCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 47997 0.67 0.460978
Target:  5'- gACCA-CGCCCCgCUACAacuaccagGGAggCGUGACc -3'
miRNA:   3'- -UGGUaGCGGGG-GGUGU--------UCUa-GCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 35862 0.67 0.460978
Target:  5'- gGCCuuggcCGCUCCCgACAGGAugUUGCGAa -3'
miRNA:   3'- -UGGua---GCGGGGGgUGUUCU--AGCGCUg -5'
1456 5' -57.8 NC_001335.1 + 9816 0.68 0.441462
Target:  5'- gACCAUCGUgCCCaACAGGccgagacccAUUGCGGCc -3'
miRNA:   3'- -UGGUAGCGgGGGgUGUUC---------UAGCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 39850 0.68 0.421484
Target:  5'- cGCCGcaucagaUCGCCUCCCACugcAGGccgucgUGCGACg -3'
miRNA:   3'- -UGGU-------AGCGGGGGGUGu--UCUa-----GCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 38359 0.69 0.403886
Target:  5'- -aCGUUGCCUCCCACAgauAGGUucucUGCGAUu -3'
miRNA:   3'- ugGUAGCGGGGGGUGU---UCUA----GCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 24851 0.69 0.40115
Target:  5'- cAUCGUCGCCgCUgagaucuucgagcaCUACcGGAUCGCGGCa -3'
miRNA:   3'- -UGGUAGCGG-GG--------------GGUGuUCUAGCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 32438 0.69 0.385871
Target:  5'- gGCCAUUGCgCgUCACAcugcuGAUCGCGAg -3'
miRNA:   3'- -UGGUAGCGgGgGGUGUu----CUAGCGCUg -5'
1456 5' -57.8 NC_001335.1 + 11205 0.7 0.35147
Target:  5'- uGCguUCGaCCCgUCuCAGGGUCGCGGCg -3'
miRNA:   3'- -UGguAGC-GGGgGGuGUUCUAGCGCUG- -5'
1456 5' -57.8 NC_001335.1 + 17866 0.7 0.35147
Target:  5'- uCCAUCGCCCUggacagcucagCCGCGAGAUCcuUGGCc -3'
miRNA:   3'- uGGUAGCGGGG-----------GGUGUUCUAGc-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.