Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14560 | 5' | -53.8 | NC_003521.1 | + | 170778 | 0.71 | 0.820541 |
Target: 5'- cUCgAACGUCuuGGCGCCCcACGUCc-- -3' miRNA: 3'- aAGgUUGCAGu-UCGCGGG-UGCAGuaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 63546 | 0.73 | 0.746727 |
Target: 5'- -cCCAGCGUCAcggAGcCGCCCuCGUCAc- -3' miRNA: 3'- aaGGUUGCAGU---UC-GCGGGuGCAGUaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 130483 | 0.68 | 0.946239 |
Target: 5'- -cCCAGCuacaccgCGAGCGCggCCGCGUCAUg -3' miRNA: 3'- aaGGUUGca-----GUUCGCG--GGUGCAGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 142433 | 0.67 | 0.954564 |
Target: 5'- -aCCAGCGUCGgcaccAGCGUCUucaggcacGCGUCGUc -3' miRNA: 3'- aaGGUUGCAGU-----UCGCGGG--------UGCAGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 109373 | 0.66 | 0.981254 |
Target: 5'- gUCCAGCGgCAGGCaGgCCAgGUCGc- -3' miRNA: 3'- aAGGUUGCaGUUCG-CgGGUgCAGUaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 191999 | 0.66 | 0.97908 |
Target: 5'- -gUCAGCGUCGAGCaGCCguuCAuCGUCGUc -3' miRNA: 3'- aaGGUUGCAGUUCG-CGG---GU-GCAGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 149275 | 0.66 | 0.97908 |
Target: 5'- gUUCC-GCGUC-GGCGCCCACa----- -3' miRNA: 3'- -AAGGuUGCAGuUCGCGGGUGcaguaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 73773 | 0.66 | 0.97908 |
Target: 5'- -aCCGGCGUCAugAGCGC-CACGcCGc- -3' miRNA: 3'- aaGGUUGCAGU--UCGCGgGUGCaGUaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 149916 | 0.66 | 0.976478 |
Target: 5'- cUCCGACGagGAcgauaacGCGCCCuccuCGUCGUc -3' miRNA: 3'- aAGGUUGCagUU-------CGCGGGu---GCAGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 128544 | 0.66 | 0.976724 |
Target: 5'- -cCCGACGUCAGGUgGCCCuuGUa--- -3' miRNA: 3'- aaGGUUGCAGUUCG-CGGGugCAguaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 135946 | 0.66 | 0.974179 |
Target: 5'- gUgCGACGccUCGGGCGCCUGCGaCAUg -3' miRNA: 3'- aAgGUUGC--AGUUCGCGGGUGCaGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 224738 | 0.66 | 0.974179 |
Target: 5'- -gCCGACG-CAGGCGgCCagcGCGUCGg- -3' miRNA: 3'- aaGGUUGCaGUUCGCgGG---UGCAGUaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 142768 | 0.67 | 0.968494 |
Target: 5'- -aCCAGCGUCc-GCGgCgGCGUCGUc -3' miRNA: 3'- aaGGUUGCAGuuCGCgGgUGCAGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 125271 | 0.67 | 0.965665 |
Target: 5'- gUCCGcgcagcacggcgcucCGUCAGGCGagCCGCGUCGUUc -3' miRNA: 3'- aAGGUu--------------GCAGUUCGCg-GGUGCAGUAA- -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 142999 | 0.67 | 0.96534 |
Target: 5'- -aCCGGCgGUCGcGcCGUCCGCGUCAa- -3' miRNA: 3'- aaGGUUG-CAGUuC-GCGGGUGCAGUaa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 224678 | 0.67 | 0.96534 |
Target: 5'- cUUCAGCGUCuuggcguGGCGCCCGgG-CGUg -3' miRNA: 3'- aAGGUUGCAGu------UCGCGGGUgCaGUAa -5' |
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14560 | 5' | -53.8 | NC_003521.1 | + | 191556 | 1.02 | 0.015491 |
Target: 5'- uUUCCAACGUCAAGCGCCCACGUCAUUu -3' miRNA: 3'- -AAGGUUGCAGUUCGCGGGUGCAGUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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