miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14562 3' -57.5 NC_003521.1 + 1906 0.66 0.928919
Target:  5'- gACGGGCUUGUCUUcGg-GGAUgGCg- -3'
miRNA:   3'- -UGCCCGAACGGGAaCagCCUAgCGac -5'
14562 3' -57.5 NC_003521.1 + 202133 0.66 0.928919
Target:  5'- gACGGGCUUGUCUUcGg-GGAUgGCg- -3'
miRNA:   3'- -UGCCCGAACGGGAaCagCCUAgCGac -5'
14562 3' -57.5 NC_003521.1 + 198728 0.66 0.923756
Target:  5'- cGCGGGCUuggUGCCagacgagguCUUGcCGuGcUCGCUGg -3'
miRNA:   3'- -UGCCCGA---ACGG---------GAACaGC-CuAGCGAC- -5'
14562 3' -57.5 NC_003521.1 + 151076 0.66 0.923756
Target:  5'- cGCGGGUUucUGgaccgccgacCCCUcggGUCGGGcCGCUGg -3'
miRNA:   3'- -UGCCCGA--AC----------GGGAa--CAGCCUaGCGAC- -5'
14562 3' -57.5 NC_003521.1 + 149600 0.66 0.900887
Target:  5'- aACGGGCUgcacGCCCUcaUG-CGcGAaacggCGCUGg -3'
miRNA:   3'- -UGCCCGAa---CGGGA--ACaGC-CUa----GCGAC- -5'
14562 3' -57.5 NC_003521.1 + 17428 0.66 0.900887
Target:  5'- -gGGGCgccacacgGCCCgcGUCGGGgcgccgcgaugUCGCUGc -3'
miRNA:   3'- ugCCCGaa------CGGGaaCAGCCU-----------AGCGAC- -5'
14562 3' -57.5 NC_003521.1 + 46187 0.67 0.888143
Target:  5'- gAUGGGCUgcacggUGCUggUGUCGuGcgCGCUGa -3'
miRNA:   3'- -UGCCCGA------ACGGgaACAGC-CuaGCGAC- -5'
14562 3' -57.5 NC_003521.1 + 237632 0.67 0.867458
Target:  5'- uCGGGUugcugUUGCCCUUGUCGccaCGCa- -3'
miRNA:   3'- uGCCCG-----AACGGGAACAGCcuaGCGac -5'
14562 3' -57.5 NC_003521.1 + 92597 0.69 0.790138
Target:  5'- cCGGGUUggguguggcauccgGUCCUcGcCGGAUCGCUGa -3'
miRNA:   3'- uGCCCGAa-------------CGGGAaCaGCCUAGCGAC- -5'
14562 3' -57.5 NC_003521.1 + 98917 0.69 0.786605
Target:  5'- cAUGGGCgaGUUg-UGUCGGAUCGCg- -3'
miRNA:   3'- -UGCCCGaaCGGgaACAGCCUAGCGac -5'
14562 3' -57.5 NC_003521.1 + 78206 0.7 0.750221
Target:  5'- aGCGGGCgcgGCgCUcGUCGGAg-GCUGu -3'
miRNA:   3'- -UGCCCGaa-CGgGAaCAGCCUagCGAC- -5'
14562 3' -57.5 NC_003521.1 + 171524 0.71 0.683141
Target:  5'- gACGGcGCc-GCCCUgUGUCGGGgcugcgCGCUGg -3'
miRNA:   3'- -UGCC-CGaaCGGGA-ACAGCCUa-----GCGAC- -5'
14562 3' -57.5 NC_003521.1 + 83574 0.73 0.574783
Target:  5'- gACGGGUcucUUGCUCUUgGUCGGAccUCGCg- -3'
miRNA:   3'- -UGCCCG---AACGGGAA-CAGCCU--AGCGac -5'
14562 3' -57.5 NC_003521.1 + 192792 1.08 0.00355
Target:  5'- cACGGGCUUGCCCUUGUCGGAUCGCUGg -3'
miRNA:   3'- -UGCCCGAACGGGAACAGCCUAGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.