miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14564 3' -51 NC_003521.1 + 77716 0.66 0.999218
Target:  5'- gGCGGCggugGUcGUg--GCGCUggCGCCCg -3'
miRNA:   3'- -CGCUGag--CGaCAauaUGCGAa-GCGGG- -5'
14564 3' -51 NC_003521.1 + 190456 0.66 0.999218
Target:  5'- aGCGGCUCcCaGUUcacguagaucucGU-CGUUUCGCCCc -3'
miRNA:   3'- -CGCUGAGcGaCAA------------UAuGCGAAGCGGG- -5'
14564 3' -51 NC_003521.1 + 203313 0.66 0.999218
Target:  5'- -gGACgUCGCUGaUGUcCGCgg-GCCCg -3'
miRNA:   3'- cgCUG-AGCGACaAUAuGCGaagCGGG- -5'
14564 3' -51 NC_003521.1 + 94947 0.66 0.999218
Target:  5'- gGCGGcCUCGUcGUcg-GCGC--CGCCCg -3'
miRNA:   3'- -CGCU-GAGCGaCAauaUGCGaaGCGGG- -5'
14564 3' -51 NC_003521.1 + 203583 0.66 0.999218
Target:  5'- -aGGCUCGUUcgcaacgugcaGUUGaGCGCgUCGCCg -3'
miRNA:   3'- cgCUGAGCGA-----------CAAUaUGCGaAGCGGg -5'
14564 3' -51 NC_003521.1 + 171500 0.66 0.999171
Target:  5'- cGCGACa-GCUGUUuggaaagcgaggacgGCGC--CGCCCu -3'
miRNA:   3'- -CGCUGagCGACAAua-------------UGCGaaGCGGG- -5'
14564 3' -51 NC_003521.1 + 173035 0.66 0.99905
Target:  5'- cGCG-CUCGCcggugggcagcUGggucugggUGUugGCUUCGUUCa -3'
miRNA:   3'- -CGCuGAGCG-----------ACa-------AUAugCGAAGCGGG- -5'
14564 3' -51 NC_003521.1 + 105324 0.66 0.99905
Target:  5'- cGCGACgUCGCcgcuuucgGUuuuaUGUGCGCgccacugCGUCCg -3'
miRNA:   3'- -CGCUG-AGCGa-------CA----AUAUGCGaa-----GCGGG- -5'
14564 3' -51 NC_003521.1 + 197213 0.66 0.99905
Target:  5'- uCGucCUCGUUGUcGUcGCGCUcgUCGUCCu -3'
miRNA:   3'- cGCu-GAGCGACAaUA-UGCGA--AGCGGG- -5'
14564 3' -51 NC_003521.1 + 58834 0.66 0.99905
Target:  5'- gGCGGC-CGUgacGUUAcugGCGCggaUGCCCa -3'
miRNA:   3'- -CGCUGaGCGa--CAAUa--UGCGaa-GCGGG- -5'
14564 3' -51 NC_003521.1 + 160391 0.66 0.99905
Target:  5'- uGCGGCUCGC-GUU---CGCgUUC-CCCg -3'
miRNA:   3'- -CGCUGAGCGaCAAuauGCG-AAGcGGG- -5'
14564 3' -51 NC_003521.1 + 98839 0.66 0.999012
Target:  5'- cGCGggccaGCUccCGCUGcagcuccugACGCUcgUCGCCCa -3'
miRNA:   3'- -CGC-----UGA--GCGACaaua-----UGCGA--AGCGGG- -5'
14564 3' -51 NC_003521.1 + 191148 0.66 0.998851
Target:  5'- gGCGACagCGCc-----GCGC-UCGCCCg -3'
miRNA:   3'- -CGCUGa-GCGacaauaUGCGaAGCGGG- -5'
14564 3' -51 NC_003521.1 + 17124 0.66 0.998851
Target:  5'- gGCGAggUCGUcgauccUGccggcGCGCUUCGCCCg -3'
miRNA:   3'- -CGCUg-AGCG------ACaaua-UGCGAAGCGGG- -5'
14564 3' -51 NC_003521.1 + 210013 0.66 0.998807
Target:  5'- cGCGGguUUCGCcGgcgggcccucgGUGCGCUaccgCGCCCa -3'
miRNA:   3'- -CGCU--GAGCGaCaa---------UAUGCGAa---GCGGG- -5'
14564 3' -51 NC_003521.1 + 61589 0.66 0.998617
Target:  5'- cGCGugcagaACUCGCUGcaggggGCGCagCGCuCCa -3'
miRNA:   3'- -CGC------UGAGCGACaaua--UGCGaaGCG-GG- -5'
14564 3' -51 NC_003521.1 + 127252 0.66 0.998617
Target:  5'- aGCGGCUCGUcg----GCGUccauggCGCCCa -3'
miRNA:   3'- -CGCUGAGCGacaauaUGCGaa----GCGGG- -5'
14564 3' -51 NC_003521.1 + 127885 0.66 0.998345
Target:  5'- gGCGGgUCGCgGUag-GCGUaguagUUGCCCg -3'
miRNA:   3'- -CGCUgAGCGaCAauaUGCGa----AGCGGG- -5'
14564 3' -51 NC_003521.1 + 59050 0.66 0.998345
Target:  5'- cGCGACUaccgggCGCUGUgg-GC-CUUCuCCCu -3'
miRNA:   3'- -CGCUGA------GCGACAauaUGcGAAGcGGG- -5'
14564 3' -51 NC_003521.1 + 89837 0.66 0.998345
Target:  5'- gGCGuuUCGUuccgaggccUGuUUGUugGCaugUCGCCCa -3'
miRNA:   3'- -CGCugAGCG---------AC-AAUAugCGa--AGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.