miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14564 5' -67.4 NC_003521.1 + 134113 0.66 0.556276
Target:  5'- gUGGCCguccUGCGCGCCUa--GCugACCCUGa -3'
miRNA:   3'- gACCGG----GCGCGCGGGgugCG--UGGGGC- -5'
14564 5' -67.4 NC_003521.1 + 153084 0.66 0.556276
Target:  5'- -gGGCCCGgGCcgggGCCcaCCACGC-CgCCGg -3'
miRNA:   3'- gaCCGGGCgCG----CGG--GGUGCGuGgGGC- -5'
14564 5' -67.4 NC_003521.1 + 62362 0.66 0.556276
Target:  5'- -cGGUgCaCGCGCUCU-CGCGCCCCu -3'
miRNA:   3'- gaCCGgGcGCGCGGGGuGCGUGGGGc -5'
14564 5' -67.4 NC_003521.1 + 34717 0.66 0.556276
Target:  5'- -cGGCgCCGUGCGCgUCCACGaACaCCGg -3'
miRNA:   3'- gaCCG-GGCGCGCG-GGGUGCgUGgGGC- -5'
14564 5' -67.4 NC_003521.1 + 16686 0.66 0.556276
Target:  5'- cCUGGCCCGaCuCGgCCCACG-GCCUgGa -3'
miRNA:   3'- -GACCGGGC-GcGCgGGGUGCgUGGGgC- -5'
14564 5' -67.4 NC_003521.1 + 72279 0.66 0.556276
Target:  5'- --aGCCCGCcaGCGCCgCCGcCGCGCUggCCGc -3'
miRNA:   3'- gacCGGGCG--CGCGG-GGU-GCGUGG--GGC- -5'
14564 5' -67.4 NC_003521.1 + 111032 0.66 0.556276
Target:  5'- -cGGCUUcaGCGCCCCAgGCgACCCuCGu -3'
miRNA:   3'- gaCCGGGcgCGCGGGGUgCG-UGGG-GC- -5'
14564 5' -67.4 NC_003521.1 + 25380 0.66 0.556276
Target:  5'- -cGGCCUG-GCGCCa---GCACCCgCGg -3'
miRNA:   3'- gaCCGGGCgCGCGGggugCGUGGG-GC- -5'
14564 5' -67.4 NC_003521.1 + 36195 0.66 0.555374
Target:  5'- cCUGGCCgaGCGgcucaaacgcuguCGCCaCAUGgACCCCGa -3'
miRNA:   3'- -GACCGGg-CGC-------------GCGGgGUGCgUGGGGC- -5'
14564 5' -67.4 NC_003521.1 + 125327 0.66 0.553573
Target:  5'- -gGGUCCGgccacagagcgacaCGCGgCCCACGCugUUCGu -3'
miRNA:   3'- gaCCGGGC--------------GCGCgGGGUGCGugGGGC- -5'
14564 5' -67.4 NC_003521.1 + 129241 0.66 0.550874
Target:  5'- gCUGGCCaCGCGCGgCaCCugGauguggaagagcaucUugCCCGu -3'
miRNA:   3'- -GACCGG-GCGCGCgG-GGugC---------------GugGGGC- -5'
14564 5' -67.4 NC_003521.1 + 6237 0.66 0.547282
Target:  5'- aUGGagaCCG-GCGCuCCCGCGgACgCCGa -3'
miRNA:   3'- gACCg--GGCgCGCG-GGGUGCgUGgGGC- -5'
14564 5' -67.4 NC_003521.1 + 135512 0.66 0.547282
Target:  5'- -cGGCgacgUCGCGCGgcguCCCCACGC-CCgCCa -3'
miRNA:   3'- gaCCG----GGCGCGC----GGGGUGCGuGG-GGc -5'
14564 5' -67.4 NC_003521.1 + 128362 0.66 0.547282
Target:  5'- gUGGCCCcgccggGCGCGCCCaccaGgGcCGCCUgGg -3'
miRNA:   3'- gACCGGG------CGCGCGGGg---UgC-GUGGGgC- -5'
14564 5' -67.4 NC_003521.1 + 163206 0.66 0.547282
Target:  5'- -cGGCCgGCGcCGUCaCGgGCGCgCCCGg -3'
miRNA:   3'- gaCCGGgCGC-GCGGgGUgCGUG-GGGC- -5'
14564 5' -67.4 NC_003521.1 + 152165 0.66 0.547282
Target:  5'- -cGGCCCaccgaccugGCG-GCCCUcUGCGCCUCGc -3'
miRNA:   3'- gaCCGGG---------CGCgCGGGGuGCGUGGGGC- -5'
14564 5' -67.4 NC_003521.1 + 24801 0.66 0.547282
Target:  5'- aCUGGCCC-UGgGCCCUGCGCuUgCUGg -3'
miRNA:   3'- -GACCGGGcGCgCGGGGUGCGuGgGGC- -5'
14564 5' -67.4 NC_003521.1 + 196975 0.66 0.547282
Target:  5'- -cGGCCgGgGCGCCUgugACGgGCCCgCGg -3'
miRNA:   3'- gaCCGGgCgCGCGGGg--UGCgUGGG-GC- -5'
14564 5' -67.4 NC_003521.1 + 73675 0.66 0.538335
Target:  5'- --cGCCCGagGCGCCCaagGCGCugCUCa -3'
miRNA:   3'- gacCGGGCg-CGCGGGg--UGCGugGGGc -5'
14564 5' -67.4 NC_003521.1 + 167674 0.66 0.538335
Target:  5'- -aGGCCgagGCgGCGCCgCCGcCGCugCCCc -3'
miRNA:   3'- gaCCGGg--CG-CGCGG-GGU-GCGugGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.