miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14565 3' -52.7 NC_003521.1 + 77718 0.66 0.996171
Target:  5'- cGGCgGUGGUCgUgGCGCUGgc--GCCCg -3'
miRNA:   3'- aCUG-CGCCAG-AgCGCGAUguuuUGGG- -5'
14565 3' -52.7 NC_003521.1 + 196073 0.66 0.996171
Target:  5'- cGAgGUGGaCUgGCGCgagagcUGCAGAcCCCg -3'
miRNA:   3'- aCUgCGCCaGAgCGCG------AUGUUUuGGG- -5'
14565 3' -52.7 NC_003521.1 + 39110 0.66 0.996171
Target:  5'- uUGGCGCaGUCguccggGCGuCUGCAGcgggauGCCCg -3'
miRNA:   3'- -ACUGCGcCAGag----CGC-GAUGUUu-----UGGG- -5'
14565 3' -52.7 NC_003521.1 + 129203 0.66 0.996171
Target:  5'- aUGAUgGUGGUCUgGCGCgugguggGCAGuccGGCgCCg -3'
miRNA:   3'- -ACUG-CGCCAGAgCGCGa------UGUU---UUG-GG- -5'
14565 3' -52.7 NC_003521.1 + 239338 0.66 0.996171
Target:  5'- uUGGCGCaGUCguccggGCGuCUGCAGcgggauGCCCg -3'
miRNA:   3'- -ACUGCGcCAGag----CGC-GAUGUUu-----UGGG- -5'
14565 3' -52.7 NC_003521.1 + 225767 0.66 0.996171
Target:  5'- aGcACGCGccgCUCGCGCUcGCGccGCUCg -3'
miRNA:   3'- aC-UGCGCca-GAGCGCGA-UGUuuUGGG- -5'
14565 3' -52.7 NC_003521.1 + 140163 0.66 0.996171
Target:  5'- gUGGgGUGGuUCUUGCGCUucuGCA--GCUCu -3'
miRNA:   3'- -ACUgCGCC-AGAGCGCGA---UGUuuUGGG- -5'
14565 3' -52.7 NC_003521.1 + 38109 0.66 0.996171
Target:  5'- cGACGCGGUCaUCuuUGgUGCcguACCCa -3'
miRNA:   3'- aCUGCGCCAG-AGc-GCgAUGuuuUGGG- -5'
14565 3' -52.7 NC_003521.1 + 111389 0.66 0.996171
Target:  5'- cGACGgaGGggaCGCGCUGCAGcggcuCCCc -3'
miRNA:   3'- aCUGCg-CCagaGCGCGAUGUUuu---GGG- -5'
14565 3' -52.7 NC_003521.1 + 104235 0.66 0.996171
Target:  5'- gGACGUGGagCUgCGCgaGCUGCA-GGCCUu -3'
miRNA:   3'- aCUGCGCCa-GA-GCG--CGAUGUuUUGGG- -5'
14565 3' -52.7 NC_003521.1 + 8916 0.66 0.996171
Target:  5'- cGGCGCGGgagaagagC-CGCuGCcGCAGGuuACCCa -3'
miRNA:   3'- aCUGCGCCa-------GaGCG-CGaUGUUU--UGGG- -5'
14565 3' -52.7 NC_003521.1 + 208903 0.66 0.996171
Target:  5'- -aGCGCgaGGUCaucgCGCGCUGCcu-GCCg -3'
miRNA:   3'- acUGCG--CCAGa---GCGCGAUGuuuUGGg -5'
14565 3' -52.7 NC_003521.1 + 114966 0.66 0.996171
Target:  5'- gGACGCGGcCaccaagGCGCUguACGaccaccgcGAGCCCg -3'
miRNA:   3'- aCUGCGCCaGag----CGCGA--UGU--------UUUGGG- -5'
14565 3' -52.7 NC_003521.1 + 197946 0.66 0.996171
Target:  5'- gGGCGCGcG-CUUGaGCUGCGcgauGCCCu -3'
miRNA:   3'- aCUGCGC-CaGAGCgCGAUGUuu--UGGG- -5'
14565 3' -52.7 NC_003521.1 + 182313 0.66 0.996171
Target:  5'- aGAUGUGGUUU-GCGCauagACAuuGCCg -3'
miRNA:   3'- aCUGCGCCAGAgCGCGa---UGUuuUGGg -5'
14565 3' -52.7 NC_003521.1 + 73618 0.66 0.996171
Target:  5'- aGAUGCGG---CGCGCcUGCc-AGCCCa -3'
miRNA:   3'- aCUGCGCCagaGCGCG-AUGuuUUGGG- -5'
14565 3' -52.7 NC_003521.1 + 48171 0.66 0.996112
Target:  5'- aGACGCccaagcccGaGUUcccgccgUCGCGUUACGAGAUCCc -3'
miRNA:   3'- aCUGCG--------C-CAG-------AGCGCGAUGUUUUGGG- -5'
14565 3' -52.7 NC_003521.1 + 129663 0.66 0.995548
Target:  5'- cGGgGCGG-C-CGCGCUauGCGGAccguCCCg -3'
miRNA:   3'- aCUgCGCCaGaGCGCGA--UGUUUu---GGG- -5'
14565 3' -52.7 NC_003521.1 + 95818 0.66 0.995548
Target:  5'- cGGCGauGUCg-GCGC-GCGAGGCCUc -3'
miRNA:   3'- aCUGCgcCAGagCGCGaUGUUUUGGG- -5'
14565 3' -52.7 NC_003521.1 + 102861 0.66 0.995548
Target:  5'- gUGGCGUaGGUCUgggcCGUGCguaGCGAGGCgCa -3'
miRNA:   3'- -ACUGCG-CCAGA----GCGCGa--UGUUUUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.