miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14565 5' -62.4 NC_003521.1 + 233361 0.66 0.774283
Target:  5'- cCUGCuggaUCCGCGGAUGCgUCGCCGGg -3'
miRNA:   3'- -GGCGca--GGGCGUCUGCGgGGCGGUUa -5'
14565 5' -62.4 NC_003521.1 + 187574 0.66 0.774283
Target:  5'- uUCGCcaagUCCGCGGGgGCUUCGCCGGc -3'
miRNA:   3'- -GGCGca--GGGCGUCUgCGGGGCGGUUa -5'
14565 5' -62.4 NC_003521.1 + 166125 0.66 0.774283
Target:  5'- gCCGC-UgCCGCGG-CGCCgCCGUCGc- -3'
miRNA:   3'- -GGCGcAgGGCGUCuGCGG-GGCGGUua -5'
14565 5' -62.4 NC_003521.1 + 62149 0.66 0.774283
Target:  5'- gCCGCGaccaCCCGguGuuccaGCGUUUCGCCAAg -3'
miRNA:   3'- -GGCGCa---GGGCguC-----UGCGGGGCGGUUa -5'
14565 5' -62.4 NC_003521.1 + 223328 0.66 0.774283
Target:  5'- gUCGCGcUgCCGCAGAUagguGCCCCagGCCu-- -3'
miRNA:   3'- -GGCGC-AgGGCGUCUG----CGGGG--CGGuua -5'
14565 5' -62.4 NC_003521.1 + 128036 0.66 0.774283
Target:  5'- gCGCGUgCCCGUAGGCGgCCaGCa--- -3'
miRNA:   3'- gGCGCA-GGGCGUCUGCgGGgCGguua -5'
14565 5' -62.4 NC_003521.1 + 233638 0.66 0.774283
Target:  5'- -gGCGUCCCGCuucauGAUGUCCgGaUCAAa -3'
miRNA:   3'- ggCGCAGGGCGu----CUGCGGGgC-GGUUa -5'
14565 5' -62.4 NC_003521.1 + 116376 0.66 0.773415
Target:  5'- aCGCGUgcCgCCGCGGcccaaccACGUCUCGCCGGa -3'
miRNA:   3'- gGCGCA--G-GGCGUC-------UGCGGGGCGGUUa -5'
14565 5' -62.4 NC_003521.1 + 48684 0.66 0.765555
Target:  5'- aCGUGgaUCCGCGGACGCCgacggaGCCGAc -3'
miRNA:   3'- gGCGCa-GGGCGUCUGCGGgg----CGGUUa -5'
14565 5' -62.4 NC_003521.1 + 13858 0.66 0.765555
Target:  5'- gCGCGggggUCuCUGCGGGCGgCgCCGCCAu- -3'
miRNA:   3'- gGCGC----AG-GGCGUCUGCgG-GGCGGUua -5'
14565 5' -62.4 NC_003521.1 + 108192 0.66 0.765555
Target:  5'- aCCGC----CGguGGCGCCgCCGCCGAg -3'
miRNA:   3'- -GGCGcaggGCguCUGCGG-GGCGGUUa -5'
14565 5' -62.4 NC_003521.1 + 223764 0.66 0.765555
Target:  5'- cUCGuCGUCCuCGCugucGGCGCCguuaCCGCCGu- -3'
miRNA:   3'- -GGC-GCAGG-GCGu---CUGCGG----GGCGGUua -5'
14565 5' -62.4 NC_003521.1 + 26008 0.66 0.765555
Target:  5'- aCCGcCGUCgCCGCGcccGGCGCCCgaCGgCGGUg -3'
miRNA:   3'- -GGC-GCAG-GGCGU---CUGCGGG--GCgGUUA- -5'
14565 5' -62.4 NC_003521.1 + 130356 0.66 0.765555
Target:  5'- gUGCGg-CCGCAGGCGCCgUGCg--- -3'
miRNA:   3'- gGCGCagGGCGUCUGCGGgGCGguua -5'
14565 5' -62.4 NC_003521.1 + 239652 0.66 0.765555
Target:  5'- gCCGUccaGUCCCGUAGGCGgCgCCGUg--- -3'
miRNA:   3'- -GGCG---CAGGGCGUCUGCgG-GGCGguua -5'
14565 5' -62.4 NC_003521.1 + 211977 0.66 0.765555
Target:  5'- gCCGCGcCgCCGCAGcucgucguccagGCGCCgcagacaCGCCAGg -3'
miRNA:   3'- -GGCGCaG-GGCGUC------------UGCGGg------GCGGUUa -5'
14565 5' -62.4 NC_003521.1 + 39425 0.66 0.765555
Target:  5'- gCCGUccaGUCCCGUAGGCGgCgCCGUg--- -3'
miRNA:   3'- -GGCG---CAGGGCGUCUGCgG-GGCGguua -5'
14565 5' -62.4 NC_003521.1 + 124116 0.66 0.765555
Target:  5'- gCGCGUCgCUGUGGugauuccCGCCCgCGCCGc- -3'
miRNA:   3'- gGCGCAG-GGCGUCu------GCGGG-GCGGUua -5'
14565 5' -62.4 NC_003521.1 + 118121 0.66 0.762917
Target:  5'- aCCGCcuccaGcCCCGCcgAGACGCCCaugaucaccggcgaCGCCAc- -3'
miRNA:   3'- -GGCG-----CaGGGCG--UCUGCGGG--------------GCGGUua -5'
14565 5' -62.4 NC_003521.1 + 223696 0.66 0.756726
Target:  5'- gCGCG-CCgGCAggaucGACGaCCUCGCCGGg -3'
miRNA:   3'- gGCGCaGGgCGU-----CUGC-GGGGCGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.