miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14566 3' -56.3 NC_003521.1 + 171929 0.66 0.966912
Target:  5'- cCUCugUgCCga--UCUGUCCGCucGCCCc -3'
miRNA:   3'- -GAGugAgGGauagAGGCAGGUG--CGGG- -5'
14566 3' -56.3 NC_003521.1 + 125345 0.66 0.966912
Target:  5'- -aCACgcggCCCacgCUguUCGUCCGCGCUCg -3'
miRNA:   3'- gaGUGa---GGGauaGA--GGCAGGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 64367 0.66 0.966912
Target:  5'- gUCACUUCgCUuggagccaCCGUCCACGCUg -3'
miRNA:   3'- gAGUGAGG-GAuaga----GGCAGGUGCGGg -5'
14566 3' -56.3 NC_003521.1 + 234766 0.66 0.966912
Target:  5'- -gCAUUCCCUucGUCgacCCG-CUAcCGCCCg -3'
miRNA:   3'- gaGUGAGGGA--UAGa--GGCaGGU-GCGGG- -5'
14566 3' -56.3 NC_003521.1 + 223679 0.66 0.963803
Target:  5'- cCUCGCgCCgCUG-CUggaaccacUCGUCCACGUCCu -3'
miRNA:   3'- -GAGUGaGG-GAUaGA--------GGCAGGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 96195 0.66 0.963803
Target:  5'- gCUCACUCCgUGUCgUCGUCCuCuCUCu -3'
miRNA:   3'- -GAGUGAGGgAUAGaGGCAGGuGcGGG- -5'
14566 3' -56.3 NC_003521.1 + 93444 0.66 0.960834
Target:  5'- aUCGcCUCCCUGaaacacaacgaggCCG-CCAUGCCCg -3'
miRNA:   3'- gAGU-GAGGGAUaga----------GGCaGGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 69169 0.66 0.960495
Target:  5'- -aCGCUCCCgacgC-CCG-CCGCGgCCg -3'
miRNA:   3'- gaGUGAGGGaua-GaGGCaGGUGCgGG- -5'
14566 3' -56.3 NC_003521.1 + 94034 0.66 0.960495
Target:  5'- gCUCGCcggggCCCgccUUCUGUCCAgGCCg -3'
miRNA:   3'- -GAGUGa----GGGauaGAGGCAGGUgCGGg -5'
14566 3' -56.3 NC_003521.1 + 121688 0.66 0.960495
Target:  5'- gCUCcUUCCaCUggUUCUGcugCCGCGCCCa -3'
miRNA:   3'- -GAGuGAGG-GAuaGAGGCa--GGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 30397 0.66 0.960495
Target:  5'- -aCGCUgCC-GUCgCCGcCCACGCCg -3'
miRNA:   3'- gaGUGAgGGaUAGaGGCaGGUGCGGg -5'
14566 3' -56.3 NC_003521.1 + 53732 0.66 0.960495
Target:  5'- gCUCgACUCCaucgcGUC-CCGagaaCCGCGCCCu -3'
miRNA:   3'- -GAG-UGAGGga---UAGaGGCa---GGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 30734 0.66 0.960495
Target:  5'- aCUC-CUCUCaGUCugUCCGUCUGCcCCCg -3'
miRNA:   3'- -GAGuGAGGGaUAG--AGGCAGGUGcGGG- -5'
14566 3' -56.3 NC_003521.1 + 204024 0.66 0.960495
Target:  5'- aUCACggccugCCCgaaaggcgCgUCC-UCCACGCCCg -3'
miRNA:   3'- gAGUGa-----GGGaua-----G-AGGcAGGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 196525 0.66 0.960495
Target:  5'- -gCAC-CCCguacGUCacgUCGUCgGCGCCCa -3'
miRNA:   3'- gaGUGaGGGa---UAGa--GGCAGgUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 198146 0.66 0.956983
Target:  5'- gUC-CUCCUcGUCUUCGUCC-CaCCCg -3'
miRNA:   3'- gAGuGAGGGaUAGAGGCAGGuGcGGG- -5'
14566 3' -56.3 NC_003521.1 + 100048 0.66 0.956983
Target:  5'- cCUC-CUCCU--UCUUCGUCguCAuCGCCCg -3'
miRNA:   3'- -GAGuGAGGGauAGAGGCAG--GU-GCGGG- -5'
14566 3' -56.3 NC_003521.1 + 224004 0.66 0.956983
Target:  5'- gUCGgUCCUcaucgAUCUCgGaUCUGCGCCCc -3'
miRNA:   3'- gAGUgAGGGa----UAGAGgC-AGGUGCGGG- -5'
14566 3' -56.3 NC_003521.1 + 113478 0.66 0.956983
Target:  5'- uCUCGCagCUCUuUC-CCGgCCugGCCCu -3'
miRNA:   3'- -GAGUGa-GGGAuAGaGGCaGGugCGGG- -5'
14566 3' -56.3 NC_003521.1 + 59912 0.66 0.956621
Target:  5'- -aCGCUCCCUcaaagccuuccugGUCUCCGacguggacgCCGaucaacaGCCCg -3'
miRNA:   3'- gaGUGAGGGA-------------UAGAGGCa--------GGUg------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.