miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14566 5' -57.2 NC_003521.1 + 191085 0.66 0.947954
Target:  5'- gCGGGGCGUAcgacugccGCAcGAc-UCGGGGCUCUa -3'
miRNA:   3'- -GCCUCGCGU--------UGU-CUccAGCCUCGAGG- -5'
14566 5' -57.2 NC_003521.1 + 212047 0.66 0.947954
Target:  5'- uCGGAGCGCAgaaaguGCAGcgcuAGGgCGGuGGCgcggCCc -3'
miRNA:   3'- -GCCUCGCGU------UGUC----UCCaGCC-UCGa---GG- -5'
14566 5' -57.2 NC_003521.1 + 14765 0.66 0.947954
Target:  5'- cCGGGGCGCGccuucgugGCcGAGGUgcUGGuGCUgCu -3'
miRNA:   3'- -GCCUCGCGU--------UGuCUCCA--GCCuCGAgG- -5'
14566 5' -57.2 NC_003521.1 + 36672 0.66 0.947954
Target:  5'- gGGGGUcucgGCcgAGCuGAGGcCGG-GCUCCg -3'
miRNA:   3'- gCCUCG----CG--UUGuCUCCaGCCuCGAGG- -5'
14566 5' -57.2 NC_003521.1 + 90393 0.66 0.947954
Target:  5'- cCGGGcGCGCucuccugcacgcGACAGAcgGGUCcGGGCUCg -3'
miRNA:   3'- -GCCU-CGCG------------UUGUCU--CCAGcCUCGAGg -5'
14566 5' -57.2 NC_003521.1 + 7737 0.66 0.947954
Target:  5'- gGGcGGCGCGagcgGCGGAGG-CGGcGGCagUCCc -3'
miRNA:   3'- gCC-UCGCGU----UGUCUCCaGCC-UCG--AGG- -5'
14566 5' -57.2 NC_003521.1 + 168152 0.66 0.947954
Target:  5'- aCGGGGCGgAAUAGGGG-CGccGC-CCa -3'
miRNA:   3'- -GCCUCGCgUUGUCUCCaGCcuCGaGG- -5'
14566 5' -57.2 NC_003521.1 + 211339 0.66 0.94375
Target:  5'- cCGcGGGCGCG--AGuGGUUGGGGUcCCg -3'
miRNA:   3'- -GC-CUCGCGUugUCuCCAGCCUCGaGG- -5'
14566 5' -57.2 NC_003521.1 + 66570 0.66 0.94375
Target:  5'- uGGcgcgccAGCGCAAC-GuGcGUCuGAGCUCCg -3'
miRNA:   3'- gCC------UCGCGUUGuCuC-CAGcCUCGAGG- -5'
14566 5' -57.2 NC_003521.1 + 39218 0.66 0.94375
Target:  5'- aGGAgcauagccGCGCAGCuGGuaaucGUCGGAGC-CCg -3'
miRNA:   3'- gCCU--------CGCGUUGuCUc----CAGCCUCGaGG- -5'
14566 5' -57.2 NC_003521.1 + 122665 0.66 0.94375
Target:  5'- uGGAGCGCGAUcGAGG-CGcccAGCaCCg -3'
miRNA:   3'- gCCUCGCGUUGuCUCCaGCc--UCGaGG- -5'
14566 5' -57.2 NC_003521.1 + 110170 0.66 0.94375
Target:  5'- aGGcGGCgGUAGCacaGGAGGUUGGGGUggaggCCg -3'
miRNA:   3'- gCC-UCG-CGUUG---UCUCCAGCCUCGa----GG- -5'
14566 5' -57.2 NC_003521.1 + 13897 0.66 0.94375
Target:  5'- cCGGGGgGCccggcGCGGAGGgggccgCGGAGg-CCg -3'
miRNA:   3'- -GCCUCgCGu----UGUCUCCa-----GCCUCgaGG- -5'
14566 5' -57.2 NC_003521.1 + 119321 0.66 0.943318
Target:  5'- gCGGAuggugauGCGCAcgcggucggGCAGGGGUCcGGc-CUCCa -3'
miRNA:   3'- -GCCU-------CGCGU---------UGUCUCCAG-CCucGAGG- -5'
14566 5' -57.2 NC_003521.1 + 87137 0.66 0.939331
Target:  5'- aGGAGCGCGA---GGuGUUGGAGCg-- -3'
miRNA:   3'- gCCUCGCGUUgucUC-CAGCCUCGagg -5'
14566 5' -57.2 NC_003521.1 + 99515 0.66 0.939331
Target:  5'- uGGAGgGCGccCAGgaucAGGUCGGAGa-CCg -3'
miRNA:   3'- gCCUCgCGUu-GUC----UCCAGCCUCgaGG- -5'
14566 5' -57.2 NC_003521.1 + 139301 0.66 0.939331
Target:  5'- aCGGAGCuGCAGCGccugcuGGUCGGccgcgucuGGCcgCCg -3'
miRNA:   3'- -GCCUCG-CGUUGUcu----CCAGCC--------UCGa-GG- -5'
14566 5' -57.2 NC_003521.1 + 186922 0.66 0.939331
Target:  5'- gGGGGCGCcgguGGCGGGGG-CGGcGGCg-- -3'
miRNA:   3'- gCCUCGCG----UUGUCUCCaGCC-UCGagg -5'
14566 5' -57.2 NC_003521.1 + 105153 0.66 0.939331
Target:  5'- cCGGAGaccaauuccagGCGACGGGGGcUGGA-CUCCu -3'
miRNA:   3'- -GCCUCg----------CGUUGUCUCCaGCCUcGAGG- -5'
14566 5' -57.2 NC_003521.1 + 84575 0.66 0.939331
Target:  5'- aGGGGU-CGACguAGAGGUCGGuguggucgaccAGCUCg -3'
miRNA:   3'- gCCUCGcGUUG--UCUCCAGCC-----------UCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.