miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14567 3' -54.1 NC_003521.1 + 123695 0.66 0.983502
Target:  5'- gUGGCGGUGgaagaggaGGCGGCGGcUGAgCGGc -3'
miRNA:   3'- -ACCGUCAUgg------UCGUCGCCaAUUgGCU- -5'
14567 3' -54.1 NC_003521.1 + 39001 0.66 0.983502
Target:  5'- aGGUAGgugucgagGCCGG-AGCGGgcgccGCCGAa -3'
miRNA:   3'- aCCGUCa-------UGGUCgUCGCCaau--UGGCU- -5'
14567 3' -54.1 NC_003521.1 + 101184 0.66 0.983502
Target:  5'- cGGCGuccgcgcCCGGCgGGCGGaucUUGACCGAg -3'
miRNA:   3'- aCCGUcau----GGUCG-UCGCC---AAUUGGCU- -5'
14567 3' -54.1 NC_003521.1 + 30844 0.66 0.983502
Target:  5'- gGGCGccuUGCgaCGGCAGCGGUUGGCg-- -3'
miRNA:   3'- aCCGUc--AUG--GUCGUCGCCAAUUGgcu -5'
14567 3' -54.1 NC_003521.1 + 98572 0.66 0.983502
Target:  5'- cGGCGG-ACCAGCugucGUGGU---CCGGc -3'
miRNA:   3'- aCCGUCaUGGUCGu---CGCCAauuGGCU- -5'
14567 3' -54.1 NC_003521.1 + 86339 0.66 0.983502
Target:  5'- gGGUGGUgagGCCGuGCAGCG---AGCCGAu -3'
miRNA:   3'- aCCGUCA---UGGU-CGUCGCcaaUUGGCU- -5'
14567 3' -54.1 NC_003521.1 + 127012 0.66 0.983502
Target:  5'- gUGGCGGUGCCcgacgacgccGCcGCGGUgcccgucgcgcUGGCCGu -3'
miRNA:   3'- -ACCGUCAUGGu---------CGuCGCCA-----------AUUGGCu -5'
14567 3' -54.1 NC_003521.1 + 56260 0.66 0.982353
Target:  5'- aGGCAG-GCCGGCAGgcagaGGUUGgacucgcaggccagcAUCGAg -3'
miRNA:   3'- aCCGUCaUGGUCGUCg----CCAAU---------------UGGCU- -5'
14567 3' -54.1 NC_003521.1 + 168536 0.66 0.981554
Target:  5'- cUGGCGGccaGCgCGGCGGCGGc--GCUGGc -3'
miRNA:   3'- -ACCGUCa--UG-GUCGUCGCCaauUGGCU- -5'
14567 3' -54.1 NC_003521.1 + 72390 0.66 0.981554
Target:  5'- cGGC-GUccucgucgaucACCAGCGGCGGaggcACUGAg -3'
miRNA:   3'- aCCGuCA-----------UGGUCGUCGCCaau-UGGCU- -5'
14567 3' -54.1 NC_003521.1 + 65715 0.66 0.981554
Target:  5'- -aGCGGcGCC-GCGGCGGcccUGGCCGGc -3'
miRNA:   3'- acCGUCaUGGuCGUCGCCa--AUUGGCU- -5'
14567 3' -54.1 NC_003521.1 + 21932 0.66 0.981554
Target:  5'- cUGGCGGgcgGCCucgggcuggAGCAGUGGgcgAGCgCGGc -3'
miRNA:   3'- -ACCGUCa--UGG---------UCGUCGCCaa-UUG-GCU- -5'
14567 3' -54.1 NC_003521.1 + 53355 0.66 0.981554
Target:  5'- cGGCG----CGGCGGCGGaggGGCCGAc -3'
miRNA:   3'- aCCGUcaugGUCGUCGCCaa-UUGGCU- -5'
14567 3' -54.1 NC_003521.1 + 161280 0.66 0.981554
Target:  5'- cGGCaacAGUAgCAGCAGCGaGggAGCUu- -3'
miRNA:   3'- aCCG---UCAUgGUCGUCGC-CaaUUGGcu -5'
14567 3' -54.1 NC_003521.1 + 87804 0.66 0.981554
Target:  5'- gGGCGGccuggGCCAGgAGCGGacauCCGc -3'
miRNA:   3'- aCCGUCa----UGGUCgUCGCCaauuGGCu -5'
14567 3' -54.1 NC_003521.1 + 46009 0.66 0.981554
Target:  5'- aGGUAGguaacgGCCAGCAGCaccGUgaagGGCCa- -3'
miRNA:   3'- aCCGUCa-----UGGUCGUCGc--CAa---UUGGcu -5'
14567 3' -54.1 NC_003521.1 + 58739 0.66 0.981554
Target:  5'- cGGCGGUG-CAGCAGCcacugcgGGCUGAg -3'
miRNA:   3'- aCCGUCAUgGUCGUCGccaa---UUGGCU- -5'
14567 3' -54.1 NC_003521.1 + 186660 0.66 0.981144
Target:  5'- cGGCGGUGgCggaGGCGGCGGccucuccaacGCCGGc -3'
miRNA:   3'- aCCGUCAUgG---UCGUCGCCaau-------UGGCU- -5'
14567 3' -54.1 NC_003521.1 + 197451 0.66 0.980937
Target:  5'- aGGCGGcGCCAGCgcaugcucuGGCGGaUGuucacgcgcggcggGCCGGa -3'
miRNA:   3'- aCCGUCaUGGUCG---------UCGCCaAU--------------UGGCU- -5'
14567 3' -54.1 NC_003521.1 + 86421 0.66 0.980305
Target:  5'- -cGCGcGUGCCcgccuccugauuggcGGCAGCGGc-GACCGAg -3'
miRNA:   3'- acCGU-CAUGG---------------UCGUCGCCaaUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.