miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14567 5' -63.4 NC_003521.1 + 123973 0.66 0.699017
Target:  5'- --gCAGGUcGuCGCGGUCGGCggCCGUCAg -3'
miRNA:   3'- gagGUCCAaC-GCGUCGGCCG--GGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 111714 0.66 0.699017
Target:  5'- gUCCAGuccGUGC-GCCGGCaCGCCAc -3'
miRNA:   3'- gAGGUCcaaCGCGuCGGCCGgGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 32893 0.66 0.699017
Target:  5'- -gCCGG--UGCuGCcGCCGuGCCCGCCGc -3'
miRNA:   3'- gaGGUCcaACG-CGuCGGC-CGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 104751 0.66 0.68962
Target:  5'- cCUCCAGcGUggagaugagcGCGCAGCCGcuGCCCagguCCAc -3'
miRNA:   3'- -GAGGUC-CAa---------CGCGUCGGC--CGGGc---GGU- -5'
14567 5' -63.4 NC_003521.1 + 236675 0.66 0.68962
Target:  5'- gUCCuGGggaagggGagaGCcGCCGGCCCGCUc -3'
miRNA:   3'- gAGGuCCaa-----Cg--CGuCGGCCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 97224 0.66 0.689619
Target:  5'- --aUAGcUUGCGCAGCaGGCCaaaGCCAg -3'
miRNA:   3'- gagGUCcAACGCGUCGgCCGGg--CGGU- -5'
14567 5' -63.4 NC_003521.1 + 33192 0.66 0.689619
Target:  5'- -aCCgaAGGUgaagGUGCAgGCCGGCgagCCGCCc -3'
miRNA:   3'- gaGG--UCCAa---CGCGU-CGGCCG---GGCGGu -5'
14567 5' -63.4 NC_003521.1 + 216370 0.66 0.688677
Target:  5'- -cCCGuGGUccGCGCGGaccuguuCCGaGCCCGCCGg -3'
miRNA:   3'- gaGGU-CCAa-CGCGUC-------GGC-CGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 45400 0.66 0.68018
Target:  5'- gCUCCuGGGUUuucaccagGUAGCCGguGCCCGCCGu -3'
miRNA:   3'- -GAGG-UCCAAcg------CGUCGGC--CGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 148731 0.66 0.68018
Target:  5'- -cCCGGGgcaccgcccUGCGCAccccccgacccCCGGUCCGCCAu -3'
miRNA:   3'- gaGGUCCa--------ACGCGUc----------GGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 74721 0.66 0.68018
Target:  5'- --gCAGGcccGCGUgaaccuGCCGGCCCGCUc -3'
miRNA:   3'- gagGUCCaa-CGCGu-----CGGCCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 186855 0.66 0.680179
Target:  5'- -cCCAGcGgcggcGUGCAGCaCGGCUCGUCGg -3'
miRNA:   3'- gaGGUC-Caa---CGCGUCG-GCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 155994 0.66 0.680179
Target:  5'- -aCCgAGGaggcgcUGCGCgAGCUGGCCCGUa- -3'
miRNA:   3'- gaGG-UCCa-----ACGCG-UCGGCCGGGCGgu -5'
14567 5' -63.4 NC_003521.1 + 162316 0.66 0.670705
Target:  5'- aUCCGcGUcGCGUguccGGUCGGCCCGuCCGa -3'
miRNA:   3'- gAGGUcCAaCGCG----UCGGCCGGGC-GGU- -5'
14567 5' -63.4 NC_003521.1 + 43337 0.66 0.661205
Target:  5'- gCUCC-----GCGCcGuCCGGCCCGCCGc -3'
miRNA:   3'- -GAGGuccaaCGCGuC-GGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 95443 0.66 0.661205
Target:  5'- -cCCAGGccgucGCGCA-CCGGCUCGCg- -3'
miRNA:   3'- gaGGUCCaa---CGCGUcGGCCGGGCGgu -5'
14567 5' -63.4 NC_003521.1 + 31241 0.66 0.661205
Target:  5'- cCUCCGcuacgUGCGCccCCGGaCCCGCCGc -3'
miRNA:   3'- -GAGGUcca--ACGCGucGGCC-GGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 31306 0.66 0.655493
Target:  5'- -aCgGGGUucugcgcgagucccuUGCGCAGCaucgCGGCCuCGCCu -3'
miRNA:   3'- gaGgUCCA---------------ACGCGUCG----GCCGG-GCGGu -5'
14567 5' -63.4 NC_003521.1 + 224284 0.66 0.655493
Target:  5'- -cCCAGGUgcacgcaggguccguUGCGCuccAGCCGaGCCgagCGCCGc -3'
miRNA:   3'- gaGGUCCA---------------ACGCG---UCGGC-CGG---GCGGU- -5'
14567 5' -63.4 NC_003521.1 + 6729 0.66 0.651683
Target:  5'- gUgCAGGgccUGaCGCAGCCaGcGCUCGCCGa -3'
miRNA:   3'- gAgGUCCa--AC-GCGUCGG-C-CGGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.