miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14567 5' -63.4 NC_003521.1 + 195600 1 0.004086
Target:  5'- gCUCCAGG-UGCGCAGCCGGCCCGCCAg -3'
miRNA:   3'- -GAGGUCCaACGCGUCGGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 214688 0.78 0.143306
Target:  5'- uCUCCgaaagaAGGgcGgaaGCAGCCGGCCCGCCGa -3'
miRNA:   3'- -GAGG------UCCaaCg--CGUCGGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 120749 0.75 0.22884
Target:  5'- -aCCAGGUgGcCGCcuggauGCCGGCCUGCCAc -3'
miRNA:   3'- gaGGUCCAaC-GCGu-----CGGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 129390 0.75 0.234089
Target:  5'- gUCCAGGUgcuUGCGCuuGCCcGCCCGCUu -3'
miRNA:   3'- gAGGUCCA---ACGCGu-CGGcCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 53196 0.74 0.2561
Target:  5'- -gCCAGcGgcGCGCGGcCCGGCUCGCCc -3'
miRNA:   3'- gaGGUC-CaaCGCGUC-GGCCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 181432 0.73 0.284097
Target:  5'- uCUCCAGGUggucguacaagugcUGCGCggcguccagcGGCUGGCgCGCCGc -3'
miRNA:   3'- -GAGGUCCA--------------ACGCG----------UCGGCCGgGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 84906 0.73 0.311781
Target:  5'- -aCCAGcGaguagGCGUAGCCGGCCUGCUc -3'
miRNA:   3'- gaGGUC-Caa---CGCGUCGGCCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 184976 0.73 0.311781
Target:  5'- -gCCAGcGUggaccUGUGCaaGGCCGGCCUGCCGc -3'
miRNA:   3'- gaGGUC-CA-----ACGCG--UCGGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 226079 0.72 0.32534
Target:  5'- -cCCGGc---CGCGGCCGGCCCGUCAc -3'
miRNA:   3'- gaGGUCcaacGCGUCGGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 86157 0.72 0.339332
Target:  5'- gCUCCAGcGUcuCGCuGCCGGCCUcgGCCAg -3'
miRNA:   3'- -GAGGUC-CAacGCGuCGGCCGGG--CGGU- -5'
14567 5' -63.4 NC_003521.1 + 207335 0.72 0.353754
Target:  5'- uCUUCGGGggGCGCgucccucgggucGGCgCGGCCgGCCGa -3'
miRNA:   3'- -GAGGUCCaaCGCG------------UCG-GCCGGgCGGU- -5'
14567 5' -63.4 NC_003521.1 + 209716 0.72 0.361127
Target:  5'- gCUCCAGGUccgaggaggucgUGCGCAG-CGGCa-GCCAc -3'
miRNA:   3'- -GAGGUCCA------------ACGCGUCgGCCGggCGGU- -5'
14567 5' -63.4 NC_003521.1 + 27793 0.71 0.368605
Target:  5'- aCUCCGGcccGCuCGGCCGGCUCGCCc -3'
miRNA:   3'- -GAGGUCcaaCGcGUCGGCCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 224081 0.71 0.376189
Target:  5'- cCUCCGgcGGgcGCGCGcGCCGGCggUCGCCGa -3'
miRNA:   3'- -GAGGU--CCaaCGCGU-CGGCCG--GGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 174528 0.71 0.383878
Target:  5'- cCUCCGGGU----CGGCUGuGCCCGCCAg -3'
miRNA:   3'- -GAGGUCCAacgcGUCGGC-CGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 224765 0.71 0.383878
Target:  5'- gCUCCGGcaGUUGUGCAGCaGcGCCCGCa- -3'
miRNA:   3'- -GAGGUC--CAACGCGUCGgC-CGGGCGgu -5'
14567 5' -63.4 NC_003521.1 + 99837 0.71 0.394816
Target:  5'- gUCCAGGUUGCugagcuuguugaagaGCAGCUGGCgcauggCgGCCAc -3'
miRNA:   3'- gAGGUCCAACG---------------CGUCGGCCG------GgCGGU- -5'
14567 5' -63.4 NC_003521.1 + 110904 0.7 0.41647
Target:  5'- -gCCAGGUguucgcgcagcaggcGCGCGGCCGcCCCGUCGu -3'
miRNA:   3'- gaGGUCCAa--------------CGCGUCGGCcGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 56455 0.7 0.432137
Target:  5'- -cCCAGGUccgagagGCGCcGCgccaCGGCCCGCCc -3'
miRNA:   3'- gaGGUCCAa------CGCGuCG----GCCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 212217 0.7 0.432137
Target:  5'- gUCCAuguacaggauGGUggcggUGCGCAGCa-GCCCGCCGu -3'
miRNA:   3'- gAGGU----------CCA-----ACGCGUCGgcCGGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.