miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14567 5' -63.4 NC_003521.1 + 6729 0.66 0.651683
Target:  5'- gUgCAGGgccUGaCGCAGCCaGcGCUCGCCGa -3'
miRNA:   3'- gAgGUCCa--AC-GCGUCGG-C-CGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 190053 0.66 0.648823
Target:  5'- -aCCAGGaccgccGCGCGGUCuucacguacguucuGGCCCGCUg -3'
miRNA:   3'- gaGGUCCaa----CGCGUCGG--------------CCGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 96867 0.67 0.642148
Target:  5'- -gCCGGGUgguagcacucGCGCAGCCGGUgCGagCAg -3'
miRNA:   3'- gaGGUCCAa---------CGCGUCGGCCGgGCg-GU- -5'
14567 5' -63.4 NC_003521.1 + 110063 0.67 0.642148
Target:  5'- gCUCCcccg-GCGCGGCgcuCGcGCCCGCCGa -3'
miRNA:   3'- -GAGGuccaaCGCGUCG---GC-CGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 128490 0.67 0.642148
Target:  5'- -gUgAGGcugUGCGC-GCCGGCCUGCg- -3'
miRNA:   3'- gaGgUCCa--ACGCGuCGGCCGGGCGgu -5'
14567 5' -63.4 NC_003521.1 + 83897 0.67 0.64024
Target:  5'- uCUgCGGGUgGCGCGaagucccccgcuCCGGCCCGUCGc -3'
miRNA:   3'- -GAgGUCCAaCGCGUc-----------GGCCGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 156594 0.67 0.632606
Target:  5'- -cCCgAGGUgGUGCAGCgCGGCCucucgCGCCu -3'
miRNA:   3'- gaGG-UCCAaCGCGUCG-GCCGG-----GCGGu -5'
14567 5' -63.4 NC_003521.1 + 119777 0.67 0.632606
Target:  5'- -aCCuGGgaccgGCGCAGCggcgacgagguCGGCgCCGCCGa -3'
miRNA:   3'- gaGGuCCaa---CGCGUCG-----------GCCG-GGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 211622 0.67 0.632606
Target:  5'- gCUCCAGGUacucguUGCGCAGCgagGGCa-GCUg -3'
miRNA:   3'- -GAGGUCCA------ACGCGUCGg--CCGggCGGu -5'
14567 5' -63.4 NC_003521.1 + 101373 0.67 0.632606
Target:  5'- -cCCGGG-UGCGCgAGCCGuCgCGCCGc -3'
miRNA:   3'- gaGGUCCaACGCG-UCGGCcGgGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 116759 0.67 0.632606
Target:  5'- -aCguGGcUUGUGCAGCgUGGgCCGCCGc -3'
miRNA:   3'- gaGguCC-AACGCGUCG-GCCgGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 221358 0.67 0.623064
Target:  5'- -aCCuGGccGCGCAGCgacaUGGuCCCGCCGc -3'
miRNA:   3'- gaGGuCCaaCGCGUCG----GCC-GGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 103548 0.67 0.623064
Target:  5'- gCUCCAGGUcGCuGgGGCCcccgcucuGCCCGCUg -3'
miRNA:   3'- -GAGGUCCAaCG-CgUCGGc-------CGGGCGGu -5'
14567 5' -63.4 NC_003521.1 + 165544 0.67 0.620202
Target:  5'- gUCgGGGUucucgaagaugacgUGCauguGCAGCCGGCCCuCCu -3'
miRNA:   3'- gAGgUCCA--------------ACG----CGUCGGCCGGGcGGu -5'
14567 5' -63.4 NC_003521.1 + 84887 0.67 0.613527
Target:  5'- gUCCGGGUgGCGCgaguaGGCCGucagcGCCCGguCCAg -3'
miRNA:   3'- gAGGUCCAaCGCG-----UCGGC-----CGGGC--GGU- -5'
14567 5' -63.4 NC_003521.1 + 156042 0.67 0.604004
Target:  5'- -gUCAGGUUcaGCGuCAGCCuGGCCaCGCuCAa -3'
miRNA:   3'- gaGGUCCAA--CGC-GUCGG-CCGG-GCG-GU- -5'
14567 5' -63.4 NC_003521.1 + 33751 0.67 0.604003
Target:  5'- aUCCAGGcgucGCGUAGUC--CCCGCCAg -3'
miRNA:   3'- gAGGUCCaa--CGCGUCGGccGGGCGGU- -5'
14567 5' -63.4 NC_003521.1 + 88551 0.67 0.604003
Target:  5'- cCUCCucGGGgcaggGCacCAGCUGGCCCGCg- -3'
miRNA:   3'- -GAGG--UCCaa---CGc-GUCGGCCGGGCGgu -5'
14567 5' -63.4 NC_003521.1 + 115378 0.67 0.601149
Target:  5'- -gCCAGGgccggcaugugcaggGCGCGGgCGGCC-GCCAc -3'
miRNA:   3'- gaGGUCCaa-------------CGCGUCgGCCGGgCGGU- -5'
14567 5' -63.4 NC_003521.1 + 175053 0.67 0.594498
Target:  5'- gUCCGGcg-GCGguGUgaugCGGCCCGUCAg -3'
miRNA:   3'- gAGGUCcaaCGCguCG----GCCGGGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.