miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14568 3' -55.7 NC_003521.1 + 221662 0.66 0.975982
Target:  5'- -gGCCACCA---GCGcCGUGCucucGGUCaCCa -3'
miRNA:   3'- cgUGGUGGUgaaUGC-GCACG----CCAG-GG- -5'
14568 3' -55.7 NC_003521.1 + 125877 0.66 0.975982
Target:  5'- aGCAgCCGCCGC-UGCGCGaGCaGcUCuCCa -3'
miRNA:   3'- -CGU-GGUGGUGaAUGCGCaCGcC-AG-GG- -5'
14568 3' -55.7 NC_003521.1 + 80993 0.66 0.975982
Target:  5'- cGCGCCuCCGCgcaGCGCcucacgGCcGGUCCg -3'
miRNA:   3'- -CGUGGuGGUGaa-UGCGca----CG-CCAGGg -5'
14568 3' -55.7 NC_003521.1 + 168719 0.66 0.975982
Target:  5'- cCACCGCCGCcggUAUGUuaucgGCGGUCa- -3'
miRNA:   3'- cGUGGUGGUGa--AUGCGca---CGCCAGgg -5'
14568 3' -55.7 NC_003521.1 + 187310 0.66 0.975982
Target:  5'- aGCACCaucgGCCGCUgcgACGCcgcagcaGCGGcCUCg -3'
miRNA:   3'- -CGUGG----UGGUGAa--UGCGca-----CGCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 135357 0.66 0.975982
Target:  5'- cGCGCgCGCCGuCUc-CGCG-GCGGUuaucgCCCg -3'
miRNA:   3'- -CGUG-GUGGU-GAauGCGCaCGCCA-----GGG- -5'
14568 3' -55.7 NC_003521.1 + 40170 0.66 0.975982
Target:  5'- uUAgCGgCGCgUugGCGUGCcGGUCCa -3'
miRNA:   3'- cGUgGUgGUGaAugCGCACG-CCAGGg -5'
14568 3' -55.7 NC_003521.1 + 129625 0.66 0.975982
Target:  5'- uCGCCgGCCGCccgGCGgGUGCucaacGUCCCc -3'
miRNA:   3'- cGUGG-UGGUGaa-UGCgCACGc----CAGGG- -5'
14568 3' -55.7 NC_003521.1 + 57916 0.66 0.975982
Target:  5'- cGCuACCGCCucauCUUcgcucgaggACGacaGCGGUCCCu -3'
miRNA:   3'- -CG-UGGUGGu---GAA---------UGCgcaCGCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 169416 0.66 0.975982
Target:  5'- aCGCCAgCACgccgUAgGCcagcagGCGGUCCUc -3'
miRNA:   3'- cGUGGUgGUGa---AUgCGca----CGCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 188673 0.66 0.975982
Target:  5'- gGUACCGUCGCUgacggGCGgGggauacGCGgGUCCCg -3'
miRNA:   3'- -CGUGGUGGUGAa----UGCgCa-----CGC-CAGGG- -5'
14568 3' -55.7 NC_003521.1 + 117612 0.66 0.975742
Target:  5'- cCGCCGCCcccguccuacccgGCgccgUAUGCGgccuaCGGUCCCc -3'
miRNA:   3'- cGUGGUGG-------------UGa---AUGCGCac---GCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 140320 0.66 0.973495
Target:  5'- uGCACCGuCCG---ACGCccGCGGUgCCa -3'
miRNA:   3'- -CGUGGU-GGUgaaUGCGcaCGCCAgGG- -5'
14568 3' -55.7 NC_003521.1 + 156161 0.66 0.973495
Target:  5'- gGCGCUGCUGCg-ACGCcuGUGCGGcaUCUCg -3'
miRNA:   3'- -CGUGGUGGUGaaUGCG--CACGCC--AGGG- -5'
14568 3' -55.7 NC_003521.1 + 183644 0.66 0.973495
Target:  5'- cCugCGCCGCUU-CGUGcUGCGGcacgCCg -3'
miRNA:   3'- cGugGUGGUGAAuGCGC-ACGCCa---GGg -5'
14568 3' -55.7 NC_003521.1 + 130140 0.66 0.973495
Target:  5'- gGCGCCGCCGCUgcCGCcaccgaGCGcuacgCCCu -3'
miRNA:   3'- -CGUGGUGGUGAauGCGca----CGCca---GGG- -5'
14568 3' -55.7 NC_003521.1 + 204003 0.66 0.973495
Target:  5'- aGCGCCgGCC-CgugGCGCGUGaucaCGGccugCCCg -3'
miRNA:   3'- -CGUGG-UGGuGaa-UGCGCAC----GCCa---GGG- -5'
14568 3' -55.7 NC_003521.1 + 103191 0.66 0.970827
Target:  5'- cGUACUcgACCGCgaUGCGCGaGCGGUaggcgUCCa -3'
miRNA:   3'- -CGUGG--UGGUGa-AUGCGCaCGCCA-----GGG- -5'
14568 3' -55.7 NC_003521.1 + 115520 0.66 0.970827
Target:  5'- cCACCGCCGCgucCGCGaacgacGCGG-CUCg -3'
miRNA:   3'- cGUGGUGGUGaauGCGCa-----CGCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 63578 0.66 0.970827
Target:  5'- aUACgGCCugU--CGCGUcuaucGCGGUUCCg -3'
miRNA:   3'- cGUGgUGGugAauGCGCA-----CGCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.