miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14568 3' -55.7 NC_003521.1 + 129625 0.66 0.975982
Target:  5'- uCGCCgGCCGCccgGCGgGUGCucaacGUCCCc -3'
miRNA:   3'- cGUGG-UGGUGaa-UGCgCACGc----CAGGG- -5'
14568 3' -55.7 NC_003521.1 + 86794 0.66 0.967076
Target:  5'- gGCACCACCGCgUACGUaccGCGaccguagagcugaaGUCCa -3'
miRNA:   3'- -CGUGGUGGUGaAUGCGca-CGC--------------CAGGg -5'
14568 3' -55.7 NC_003521.1 + 178959 0.66 0.967971
Target:  5'- aGCugCgACCACgaagACGCG-GCGGUg-- -3'
miRNA:   3'- -CGugG-UGGUGaa--UGCGCaCGCCAggg -5'
14568 3' -55.7 NC_003521.1 + 150917 0.66 0.964922
Target:  5'- cGCGCCcuuCCACg---GCGUGUGGgCCg -3'
miRNA:   3'- -CGUGGu--GGUGaaugCGCACGCCaGGg -5'
14568 3' -55.7 NC_003521.1 + 39024 0.66 0.964922
Target:  5'- gGCGCCGCCGaaggaUUGCuggGCGUcUGGgugCCCa -3'
miRNA:   3'- -CGUGGUGGUg----AAUG---CGCAcGCCa--GGG- -5'
14568 3' -55.7 NC_003521.1 + 217753 0.66 0.964922
Target:  5'- cGCAgaCACCACagACGCGgguggagaGCgGGUCCa -3'
miRNA:   3'- -CGUg-GUGGUGaaUGCGCa-------CG-CCAGGg -5'
14568 3' -55.7 NC_003521.1 + 187310 0.66 0.975982
Target:  5'- aGCACCaucgGCCGCUgcgACGCcgcagcaGCGGcCUCg -3'
miRNA:   3'- -CGUGG----UGGUGAa--UGCGca-----CGCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 57916 0.66 0.975982
Target:  5'- cGCuACCGCCucauCUUcgcucgaggACGacaGCGGUCCCu -3'
miRNA:   3'- -CG-UGGUGGu---GAA---------UGCgcaCGCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 117612 0.66 0.975742
Target:  5'- cCGCCGCCcccguccuacccgGCgccgUAUGCGgccuaCGGUCCCc -3'
miRNA:   3'- cGUGGUGG-------------UGa---AUGCGCac---GCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 188673 0.66 0.975982
Target:  5'- gGUACCGUCGCUgacggGCGgGggauacGCGgGUCCCg -3'
miRNA:   3'- -CGUGGUGGUGAa----UGCgCa-----CGC-CAGGG- -5'
14568 3' -55.7 NC_003521.1 + 168089 0.66 0.965235
Target:  5'- gGCACCACCGgUcggaugcccuccaacACGCGcccGgGGUCCUg -3'
miRNA:   3'- -CGUGGUGGUgAa--------------UGCGCa--CgCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 40170 0.66 0.975982
Target:  5'- uUAgCGgCGCgUugGCGUGCcGGUCCa -3'
miRNA:   3'- cGUgGUgGUGaAugCGCACG-CCAGGg -5'
14568 3' -55.7 NC_003521.1 + 234966 0.66 0.964606
Target:  5'- -aGCCugCggACcaACGaggccuaCGUGCGGUCCCa -3'
miRNA:   3'- cgUGGugG--UGaaUGC-------GCACGCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 123582 0.66 0.961675
Target:  5'- uGCAgCGCCGCgugAUGCGUGCccuugcGUCgCa -3'
miRNA:   3'- -CGUgGUGGUGaa-UGCGCACGc-----CAGgG- -5'
14568 3' -55.7 NC_003521.1 + 191481 0.66 0.970827
Target:  5'- -gGCCACCAC--ACGCGcagaCGGcauUCCCa -3'
miRNA:   3'- cgUGGUGGUGaaUGCGCac--GCC---AGGG- -5'
14568 3' -55.7 NC_003521.1 + 130140 0.66 0.973495
Target:  5'- gGCGCCGCCGCUgcCGCcaccgaGCGcuacgCCCu -3'
miRNA:   3'- -CGUGGUGGUGAauGCGca----CGCca---GGG- -5'
14568 3' -55.7 NC_003521.1 + 54532 0.66 0.970827
Target:  5'- gGCGCCGCUggggcccggcgGCUuuuugacguUGCGCuugacgcggguGUGCGG-CCCg -3'
miRNA:   3'- -CGUGGUGG-----------UGA---------AUGCG-----------CACGCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 71308 0.66 0.964922
Target:  5'- gGCACCAgCACcugGgGCG-GCGGcgUCCg -3'
miRNA:   3'- -CGUGGUgGUGaa-UgCGCaCGCCa-GGG- -5'
14568 3' -55.7 NC_003521.1 + 53367 0.66 0.967971
Target:  5'- aGCACCGucCCGCUgACGCG-GCGca-CCa -3'
miRNA:   3'- -CGUGGU--GGUGAaUGCGCaCGCcagGG- -5'
14568 3' -55.7 NC_003521.1 + 233773 0.66 0.967971
Target:  5'- gGCAUCAUCACggGCGUcuccgGUGGUCUUu -3'
miRNA:   3'- -CGUGGUGGUGaaUGCGca---CGCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.