miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14568 3' -55.7 NC_003521.1 + 4344 0.69 0.89374
Target:  5'- gGCGCCACCGCc-GC-CG-GCGGUUCg -3'
miRNA:   3'- -CGUGGUGGUGaaUGcGCaCGCCAGGg -5'
14568 3' -55.7 NC_003521.1 + 4361 0.68 0.928112
Target:  5'- cGguUCGCCGCUUGCGgcCGaGCaGGUUCCa -3'
miRNA:   3'- -CguGGUGGUGAAUGC--GCaCG-CCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 4673 0.68 0.917533
Target:  5'- gGUcCCGCCGgcgACGuCGcGCGGUCCCc -3'
miRNA:   3'- -CGuGGUGGUgaaUGC-GCaCGCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 7657 0.8 0.369822
Target:  5'- -gGCCGCCACggcgGCGCGgacaGCGGUgCCCa -3'
miRNA:   3'- cgUGGUGGUGaa--UGCGCa---CGCCA-GGG- -5'
14568 3' -55.7 NC_003521.1 + 8621 0.69 0.880561
Target:  5'- cCACCACCACc--CGCG-GgGG-CCCa -3'
miRNA:   3'- cGUGGUGGUGaauGCGCaCgCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 12121 0.7 0.851785
Target:  5'- cCGCCGCCGCgcuccuuCGgGUGCGGcggCCUu -3'
miRNA:   3'- cGUGGUGGUGaau----GCgCACGCCa--GGG- -5'
14568 3' -55.7 NC_003521.1 + 13878 0.66 0.964922
Target:  5'- gGCGCCGCCAUggauuuCGCcggGgGG-CCCg -3'
miRNA:   3'- -CGUGGUGGUGaau---GCGca-CgCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 14466 0.67 0.950701
Target:  5'- -aGCCGCCGCUccCGCG-GCGcuaCCCg -3'
miRNA:   3'- cgUGGUGGUGAauGCGCaCGCca-GGG- -5'
14568 3' -55.7 NC_003521.1 + 14981 0.77 0.507745
Target:  5'- cGCACCACCACgaGCGCGccGUGGaCCa -3'
miRNA:   3'- -CGUGGUGGUGaaUGCGCa-CGCCaGGg -5'
14568 3' -55.7 NC_003521.1 + 16267 0.67 0.949902
Target:  5'- uGCGCUGCCGCUgguuccugcuggGCGcCGUG-GGUgCCu -3'
miRNA:   3'- -CGUGGUGGUGAa-----------UGC-GCACgCCAgGG- -5'
14568 3' -55.7 NC_003521.1 + 17343 0.68 0.936408
Target:  5'- cGCcCCACCucccgggccgugacGCcgGCGCG-GCGG-CCCa -3'
miRNA:   3'- -CGuGGUGG--------------UGaaUGCGCaCGCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 17497 0.67 0.954568
Target:  5'- gGCGCCGCCGgUcACG---GCGGuUCCCg -3'
miRNA:   3'- -CGUGGUGGUgAaUGCgcaCGCC-AGGG- -5'
14568 3' -55.7 NC_003521.1 + 18558 0.67 0.956056
Target:  5'- gGCACCAUCACgcGCGCGcagcUGgagagcgcgcucgacUGGUUCCu -3'
miRNA:   3'- -CGUGGUGGUGaaUGCGC----AC---------------GCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 21654 0.71 0.803228
Target:  5'- -aGCCGCCACUggaacACGC-UGCGGcgCCUg -3'
miRNA:   3'- cgUGGUGGUGAa----UGCGcACGCCa-GGG- -5'
14568 3' -55.7 NC_003521.1 + 22185 0.66 0.964922
Target:  5'- gGCGCCGCCggccguggccGCUUaccgccGCGCGcugGCGG-CCg -3'
miRNA:   3'- -CGUGGUGG----------UGAA------UGCGCa--CGCCaGGg -5'
14568 3' -55.7 NC_003521.1 + 22398 0.67 0.940991
Target:  5'- gGUGCCGCCGCUgucgcuggccaugcUGCGCGgcGUGG-CCg -3'
miRNA:   3'- -CGUGGUGGUGA--------------AUGCGCa-CGCCaGGg -5'
14568 3' -55.7 NC_003521.1 + 22585 0.67 0.954568
Target:  5'- uGCACCgGCCugUccUACcUGgGCGGUCUCa -3'
miRNA:   3'- -CGUGG-UGGugA--AUGcGCaCGCCAGGG- -5'
14568 3' -55.7 NC_003521.1 + 23427 0.69 0.887255
Target:  5'- -uGCCGCCGCUca-GCcugGCGGUgCCCa -3'
miRNA:   3'- cgUGGUGGUGAaugCGca-CGCCA-GGG- -5'
14568 3' -55.7 NC_003521.1 + 27505 0.68 0.928112
Target:  5'- -aACU-CCACgggGgGCGUGCGG-CCCg -3'
miRNA:   3'- cgUGGuGGUGaa-UgCGCACGCCaGGG- -5'
14568 3' -55.7 NC_003521.1 + 28574 0.66 0.970827
Target:  5'- -gGCCACCGacUACGCGgacgGCGGgCUg -3'
miRNA:   3'- cgUGGUGGUgaAUGCGCa---CGCCaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.