miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14568 5' -57.8 NC_003521.1 + 38908 0.66 0.901403
Target:  5'- --uGCGGCGucCCCGCccUGUGUCGUGg -3'
miRNA:   3'- cauCGUCGC--GGGCGucGCACAGCAUu -5'
14568 5' -57.8 NC_003521.1 + 157979 0.66 0.901403
Target:  5'- gGUAGCGacgccGcCGCCCGCGGCGauUUGUGu -3'
miRNA:   3'- -CAUCGU-----C-GCGGGCGUCGCacAGCAUu -5'
14568 5' -57.8 NC_003521.1 + 124466 0.66 0.901403
Target:  5'- -cAGCAGCucgGCCuCGUcgGGCGgcugGUCGUAGc -3'
miRNA:   3'- caUCGUCG---CGG-GCG--UCGCa---CAGCAUU- -5'
14568 5' -57.8 NC_003521.1 + 99617 0.66 0.895079
Target:  5'- --uGCAGCGCCCGgCGGCGcagCGc-- -3'
miRNA:   3'- cauCGUCGCGGGC-GUCGCacaGCauu -5'
14568 5' -57.8 NC_003521.1 + 127436 0.66 0.895079
Target:  5'- --cGCAccCGCCCGCGGCGUccGcCGUAAc -3'
miRNA:   3'- cauCGUc-GCGGGCGUCGCA--CaGCAUU- -5'
14568 5' -57.8 NC_003521.1 + 92138 0.66 0.895079
Target:  5'- gGUGGCAGCuggcCCCGacgAGCGUGUaGUGGu -3'
miRNA:   3'- -CAUCGUCGc---GGGCg--UCGCACAgCAUU- -5'
14568 5' -57.8 NC_003521.1 + 210407 0.66 0.895079
Target:  5'- -cAGCuGgGaCCGCAGCGUGgucggCGUGGg -3'
miRNA:   3'- caUCGuCgCgGGCGUCGCACa----GCAUU- -5'
14568 5' -57.8 NC_003521.1 + 74907 0.66 0.895079
Target:  5'- gGUGGCGGCgguggagucgGCCCgGCAGCGcgggGUgGUGu -3'
miRNA:   3'- -CAUCGUCG----------CGGG-CGUCGCa---CAgCAUu -5'
14568 5' -57.8 NC_003521.1 + 192816 0.66 0.888536
Target:  5'- cUGGCAGCagccgcagaaGCCCgGCGGCGcGUcCGUGGa -3'
miRNA:   3'- cAUCGUCG----------CGGG-CGUCGCaCA-GCAUU- -5'
14568 5' -57.8 NC_003521.1 + 223191 0.66 0.888536
Target:  5'- cGUAcGUAGC-UCCGCAGCGcGUCGg-- -3'
miRNA:   3'- -CAU-CGUCGcGGGCGUCGCaCAGCauu -5'
14568 5' -57.8 NC_003521.1 + 122834 0.66 0.888536
Target:  5'- cGUGGaUGGCGUCgCGCAGCucGUCGUAGc -3'
miRNA:   3'- -CAUC-GUCGCGG-GCGUCGcaCAGCAUU- -5'
14568 5' -57.8 NC_003521.1 + 34929 0.66 0.888536
Target:  5'- aGUAGCGGCGCagacccucguagUCGCGGCGcacgcagagGUCGg-- -3'
miRNA:   3'- -CAUCGUCGCG------------GGCGUCGCa--------CAGCauu -5'
14568 5' -57.8 NC_003521.1 + 27974 0.66 0.888536
Target:  5'- -aGGCGGCGCUCacggccacggcgGCAGCGUGagCGg-- -3'
miRNA:   3'- caUCGUCGCGGG------------CGUCGCACa-GCauu -5'
14568 5' -57.8 NC_003521.1 + 171649 0.66 0.888536
Target:  5'- ---cUAGCGCgCCGCGGCGggcGUCGg-- -3'
miRNA:   3'- caucGUCGCG-GGCGUCGCa--CAGCauu -5'
14568 5' -57.8 NC_003521.1 + 85873 0.66 0.888536
Target:  5'- -gGGCaccaGGCGCUCGCGguagaggcGCGUGUCGc-- -3'
miRNA:   3'- caUCG----UCGCGGGCGU--------CGCACAGCauu -5'
14568 5' -57.8 NC_003521.1 + 23441 0.66 0.881776
Target:  5'- cUGGCGGUGCCCaCGGUGUGccuggcCGUGu -3'
miRNA:   3'- cAUCGUCGCGGGcGUCGCACa-----GCAUu -5'
14568 5' -57.8 NC_003521.1 + 113533 0.66 0.881776
Target:  5'- -aGGC-GCGCCaccaCGGCGUGUCGg-- -3'
miRNA:   3'- caUCGuCGCGGgc--GUCGCACAGCauu -5'
14568 5' -57.8 NC_003521.1 + 203473 0.66 0.881776
Target:  5'- -aAGCAGCGCuCCGUcgucugcacauAGCGUacGUCGa-- -3'
miRNA:   3'- caUCGUCGCG-GGCG-----------UCGCA--CAGCauu -5'
14568 5' -57.8 NC_003521.1 + 99972 0.66 0.881776
Target:  5'- -cAGCAGCGUgUGCagguugGGCGUGUUGa-- -3'
miRNA:   3'- caUCGUCGCGgGCG------UCGCACAGCauu -5'
14568 5' -57.8 NC_003521.1 + 123564 0.66 0.881776
Target:  5'- --uGCAGCGCCagGCAGuCGUGcagcgccgCGUGAu -3'
miRNA:   3'- cauCGUCGCGGg-CGUC-GCACa-------GCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.