miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14569 3' -59.8 NC_003521.1 + 106183 0.66 0.883395
Target:  5'- -uGCGcGACCUCUCCGAgaGCuCCGaggugGCCa -3'
miRNA:   3'- guCGUaCUGGAGGGGCUg-CG-GGC-----UGG- -5'
14569 3' -59.8 NC_003521.1 + 94351 0.66 0.883395
Target:  5'- -cGuCGUcGuCCUCCUCGAgGUCCGACUc -3'
miRNA:   3'- guC-GUA-CuGGAGGGGCUgCGGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 213311 0.66 0.883395
Target:  5'- gGGCGccucgGGCCgcacgccCCCCGugGaguucUCCGACCg -3'
miRNA:   3'- gUCGUa----CUGGa------GGGGCugC-----GGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 224724 0.66 0.883395
Target:  5'- -cGCccgugGugCUCgCCGACGCaggCGGCCa -3'
miRNA:   3'- guCGua---CugGAGgGGCUGCGg--GCUGG- -5'
14569 3' -59.8 NC_003521.1 + 18902 0.66 0.883395
Target:  5'- -uGCAU--CUUCCCCucgcACGCCUGGCCc -3'
miRNA:   3'- guCGUAcuGGAGGGGc---UGCGGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 140478 0.66 0.883395
Target:  5'- -cGCGUGGCUUCgCCGcgguugaggaagGCGCCCG-Cg -3'
miRNA:   3'- guCGUACUGGAGgGGC------------UGCGGGCuGg -5'
14569 3' -59.8 NC_003521.1 + 129117 0.66 0.883395
Target:  5'- cCGGCGcacgGACUggaCgUCGGCGUCCGACUg -3'
miRNA:   3'- -GUCGUa---CUGGa--GgGGCUGCGGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 210582 0.66 0.883395
Target:  5'- aCGGCAaccgcgcgGACCUgCagcgCGACGCCaaCGGCCg -3'
miRNA:   3'- -GUCGUa-------CUGGAgGg---GCUGCGG--GCUGG- -5'
14569 3' -59.8 NC_003521.1 + 109718 0.66 0.883395
Target:  5'- cCGGCAgccgcGCCgCCCCGcCGUCCGgaGCCc -3'
miRNA:   3'- -GUCGUac---UGGaGGGGCuGCGGGC--UGG- -5'
14569 3' -59.8 NC_003521.1 + 26835 0.66 0.88274
Target:  5'- uCAGguUGACCguUCCCagaccgaUGACGCgCGAaCCg -3'
miRNA:   3'- -GUCguACUGG--AGGG-------GCUGCGgGCU-GG- -5'
14569 3' -59.8 NC_003521.1 + 187722 0.66 0.879435
Target:  5'- cCAGCgguacGUGACUugucucaucgccacgUCCagcgacugaaCGGCGCCCGAUCa -3'
miRNA:   3'- -GUCG-----UACUGG---------------AGGg---------GCUGCGGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 61328 0.66 0.876757
Target:  5'- gGGaCAcGugUUCCCCGGCGCU--GCCg -3'
miRNA:   3'- gUC-GUaCugGAGGGGCUGCGGgcUGG- -5'
14569 3' -59.8 NC_003521.1 + 91926 0.66 0.876757
Target:  5'- gCGGC--GGCgCUCCUCGGCG-UCGGCCa -3'
miRNA:   3'- -GUCGuaCUG-GAGGGGCUGCgGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 205790 0.66 0.876757
Target:  5'- aCGGCAUGAgCgugCCCaaccGCGUCCG-CCg -3'
miRNA:   3'- -GUCGUACUgGa--GGGgc--UGCGGGCuGG- -5'
14569 3' -59.8 NC_003521.1 + 118155 0.66 0.876757
Target:  5'- cCGGCGacGCCaCCCCaccgccgcagacGACGCCCG-CCg -3'
miRNA:   3'- -GUCGUacUGGaGGGG------------CUGCGGGCuGG- -5'
14569 3' -59.8 NC_003521.1 + 97226 0.66 0.876757
Target:  5'- gCAGCcgGUGGCCgucagcagUCCgcgguaGACGCCCGugCc -3'
miRNA:   3'- -GUCG--UACUGGa-------GGGg-----CUGCGGGCugG- -5'
14569 3' -59.8 NC_003521.1 + 123748 0.66 0.876757
Target:  5'- aCAGCAgaaGGCCggCCgGAUGUCCGAguCCu -3'
miRNA:   3'- -GUCGUa--CUGGagGGgCUGCGGGCU--GG- -5'
14569 3' -59.8 NC_003521.1 + 62871 0.66 0.876757
Target:  5'- uCAGCAUc-CCUCCCgGuacCGaCCGGCCa -3'
miRNA:   3'- -GUCGUAcuGGAGGGgCu--GCgGGCUGG- -5'
14569 3' -59.8 NC_003521.1 + 100777 0.66 0.876757
Target:  5'- -uGCAacgaGGCCUUCCUGcCGCCaUGGCCu -3'
miRNA:   3'- guCGUa---CUGGAGGGGCuGCGG-GCUGG- -5'
14569 3' -59.8 NC_003521.1 + 223301 0.66 0.876082
Target:  5'- gCAGCGgaUGGCgUCCUCGcaGCGCUCGucgcgcuGCCg -3'
miRNA:   3'- -GUCGU--ACUGgAGGGGC--UGCGGGC-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.