miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14569 5' -54.6 NC_003521.1 + 70234 0.66 0.984302
Target:  5'- cGCAGCaGGGcUAgGCAGGgcgagcuggUGGggUGCa -3'
miRNA:   3'- -UGUCGcCCC-AUgCGUCU---------GCCuuAUGc -5'
14569 5' -54.6 NC_003521.1 + 18747 0.66 0.984302
Target:  5'- -uGGCGGcGGUgGCGCcGACGGGucgcugcUGCGa -3'
miRNA:   3'- ugUCGCC-CCA-UGCGuCUGCCUu------AUGC- -5'
14569 5' -54.6 NC_003521.1 + 87579 0.66 0.984302
Target:  5'- gGCAG-GcGGGUGCGCAcGCGGAcgAa- -3'
miRNA:   3'- -UGUCgC-CCCAUGCGUcUGCCUuaUgc -5'
14569 5' -54.6 NC_003521.1 + 187074 0.66 0.984302
Target:  5'- aGCgAGCGGaGG-GCGCGGuucuCGGGAcGCGa -3'
miRNA:   3'- -UG-UCGCC-CCaUGCGUCu---GCCUUaUGC- -5'
14569 5' -54.6 NC_003521.1 + 54051 0.66 0.984302
Target:  5'- gACuGCGGuuGGUcguCGCAGAUGGggUuccgGCGc -3'
miRNA:   3'- -UGuCGCC--CCAu--GCGUCUGCCuuA----UGC- -5'
14569 5' -54.6 NC_003521.1 + 149053 0.66 0.984302
Target:  5'- gGguGUGGGGggAUGCGGgacccGCGGggUAgGg -3'
miRNA:   3'- -UguCGCCCCa-UGCGUC-----UGCCuuAUgC- -5'
14569 5' -54.6 NC_003521.1 + 77716 0.66 0.984302
Target:  5'- gGCGGCGGuGGUcgugGCGCuGGCGcccGAggACGg -3'
miRNA:   3'- -UGUCGCC-CCA----UGCGuCUGC---CUuaUGC- -5'
14569 5' -54.6 NC_003521.1 + 46442 0.66 0.984302
Target:  5'- cCGGCGGGGcUGCGgGGGCuGGucgGCc -3'
miRNA:   3'- uGUCGCCCC-AUGCgUCUG-CCuuaUGc -5'
14569 5' -54.6 NC_003521.1 + 115434 0.66 0.984124
Target:  5'- cGCGGCgcgGGGGUGacggugguugUGCGGACGGugguaguGGUGCa -3'
miRNA:   3'- -UGUCG---CCCCAU----------GCGUCUGCC-------UUAUGc -5'
14569 5' -54.6 NC_003521.1 + 197487 0.66 0.984124
Target:  5'- cGCGGCGGGccggacgGCGCGGAgcaguguucguucCGGGGaACGg -3'
miRNA:   3'- -UGUCGCCCca-----UGCGUCU-------------GCCUUaUGC- -5'
14569 5' -54.6 NC_003521.1 + 155340 0.66 0.982454
Target:  5'- cCGGCGGGG-GCGCGGGCaccGGcaccACGa -3'
miRNA:   3'- uGUCGCCCCaUGCGUCUG---CCuua-UGC- -5'
14569 5' -54.6 NC_003521.1 + 168442 0.66 0.982454
Target:  5'- gGCGGCGGGcGUGaagaGCGuGAUGGGGcGCu -3'
miRNA:   3'- -UGUCGCCC-CAUg---CGU-CUGCCUUaUGc -5'
14569 5' -54.6 NC_003521.1 + 126575 0.66 0.982454
Target:  5'- gGCAGCGGGaagccgccgucGUGC-CGGugGuAGUGCGg -3'
miRNA:   3'- -UGUCGCCC-----------CAUGcGUCugCcUUAUGC- -5'
14569 5' -54.6 NC_003521.1 + 147846 0.66 0.982261
Target:  5'- uGCAGcCGGGGgu-GCAGGCGcGAgaaguggaacagcGUGCGc -3'
miRNA:   3'- -UGUC-GCCCCaugCGUCUGC-CU-------------UAUGC- -5'
14569 5' -54.6 NC_003521.1 + 229443 0.66 0.98127
Target:  5'- uGguGaCGGGGUuguaguagacacaugGCGUGGGCGGGuUACGu -3'
miRNA:   3'- -UguC-GCCCCA---------------UGCGUCUGCCUuAUGC- -5'
14569 5' -54.6 NC_003521.1 + 177994 0.66 0.980448
Target:  5'- gGCGGUGcGGGUaggGCGgguaGGACGGAG-GCGg -3'
miRNA:   3'- -UGUCGC-CCCA---UGCg---UCUGCCUUaUGC- -5'
14569 5' -54.6 NC_003521.1 + 229603 0.66 0.980448
Target:  5'- cACGGUGGuauGUACGUGGACGuGAGgcgcgACGg -3'
miRNA:   3'- -UGUCGCCc--CAUGCGUCUGC-CUUa----UGC- -5'
14569 5' -54.6 NC_003521.1 + 181654 0.66 0.980448
Target:  5'- -aAGCGGGGcauggUGCGCGGGggagauCGGAGagagACGg -3'
miRNA:   3'- ugUCGCCCC-----AUGCGUCU------GCCUUa---UGC- -5'
14569 5' -54.6 NC_003521.1 + 60309 0.66 0.978276
Target:  5'- uGCAGCGccuacGCGCAGACGGcgcuGAUGCa -3'
miRNA:   3'- -UGUCGCccca-UGCGUCUGCC----UUAUGc -5'
14569 5' -54.6 NC_003521.1 + 105755 0.66 0.978276
Target:  5'- uGguGuUGGGGgagAUGCAGACGGuGGUGCc -3'
miRNA:   3'- -UguC-GCCCCa--UGCGUCUGCC-UUAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.