miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1457 3' -55.4 NC_001335.1 + 38579 0.66 0.742133
Target:  5'- uUCCA-CGgCGACgaaaCGCCGUCUGCc -3'
miRNA:   3'- gAGGUuGCgGCUGga--GUGGCAGAUGc -5'
1457 3' -55.4 NC_001335.1 + 10675 0.66 0.742133
Target:  5'- gCUCCGACGCCG-CCUaGCaCG-CgGCGa -3'
miRNA:   3'- -GAGGUUGCGGCuGGAgUG-GCaGaUGC- -5'
1457 3' -55.4 NC_001335.1 + 4781 0.66 0.742133
Target:  5'- uUCCGGC-UCGACCaCAagaUCGUCUACGa -3'
miRNA:   3'- gAGGUUGcGGCUGGaGU---GGCAGAUGC- -5'
1457 3' -55.4 NC_001335.1 + 34196 0.66 0.742133
Target:  5'- aUCC-GCGCCGACCggcgcaCACCGcCgGCc -3'
miRNA:   3'- gAGGuUGCGGCUGGa-----GUGGCaGaUGc -5'
1457 3' -55.4 NC_001335.1 + 13394 0.66 0.7317
Target:  5'- -aCCAGCgGUgGGCgCUCuucggagacgccACCGUCUACGa -3'
miRNA:   3'- gaGGUUG-CGgCUG-GAG------------UGGCAGAUGC- -5'
1457 3' -55.4 NC_001335.1 + 7386 0.66 0.721169
Target:  5'- aUCgCGugGCCuucauuGACCUUGCCGUCgggGCc -3'
miRNA:   3'- gAG-GUugCGG------CUGGAGUGGCAGa--UGc -5'
1457 3' -55.4 NC_001335.1 + 25242 0.66 0.721169
Target:  5'- uCUgCAGCGCguaGuACCUCacACCGUcCUGCGg -3'
miRNA:   3'- -GAgGUUGCGg--C-UGGAG--UGGCA-GAUGC- -5'
1457 3' -55.4 NC_001335.1 + 49196 0.66 0.699858
Target:  5'- cCUUCGAgGucaCCGACCUCGUCGUCgUACGc -3'
miRNA:   3'- -GAGGUUgC---GGCUGGAGUGGCAG-AUGC- -5'
1457 3' -55.4 NC_001335.1 + 5811 0.66 0.689099
Target:  5'- uCUCCAGCGCCuGCUUgACCuUC-GCGa -3'
miRNA:   3'- -GAGGUUGCGGcUGGAgUGGcAGaUGC- -5'
1457 3' -55.4 NC_001335.1 + 13695 0.67 0.682617
Target:  5'- -cCCAACGCguuggcgcuugaguuCGGCCacgCGCCGUCUGg- -3'
miRNA:   3'- gaGGUUGCG---------------GCUGGa--GUGGCAGAUgc -5'
1457 3' -55.4 NC_001335.1 + 22900 0.67 0.678287
Target:  5'- gCUCCGAcCGUCGGCaUCACCGaCgGCGu -3'
miRNA:   3'- -GAGGUU-GCGGCUGgAGUGGCaGaUGC- -5'
1457 3' -55.4 NC_001335.1 + 16384 0.67 0.678287
Target:  5'- uCUCCAGCGUCGGgg-CAgCGUCgagGCGg -3'
miRNA:   3'- -GAGGUUGCGGCUggaGUgGCAGa--UGC- -5'
1457 3' -55.4 NC_001335.1 + 747 0.67 0.63471
Target:  5'- gUgCAGCGCCGACCUgcuuuaCGCgGUCgagaagGCGc -3'
miRNA:   3'- gAgGUUGCGGCUGGA------GUGgCAGa-----UGC- -5'
1457 3' -55.4 NC_001335.1 + 25789 0.67 0.63471
Target:  5'- uUgCAGCgGUCGGaacCCUCGCCGUCgGCGg -3'
miRNA:   3'- gAgGUUG-CGGCU---GGAGUGGCAGaUGC- -5'
1457 3' -55.4 NC_001335.1 + 13129 0.67 0.63471
Target:  5'- -aCCggUGCCcgguaccaGACCUgCAUCGUCUACc -3'
miRNA:   3'- gaGGuuGCGG--------CUGGA-GUGGCAGAUGc -5'
1457 3' -55.4 NC_001335.1 + 32946 0.68 0.601966
Target:  5'- gCUCCugaGCCugaGACCgCGCCGUCgGCGa -3'
miRNA:   3'- -GAGGuugCGG---CUGGaGUGGCAGaUGC- -5'
1457 3' -55.4 NC_001335.1 + 32630 0.69 0.5587
Target:  5'- -gCCGGCGCgGAUC-CACCGgagcCUGCGu -3'
miRNA:   3'- gaGGUUGCGgCUGGaGUGGCa---GAUGC- -5'
1457 3' -55.4 NC_001335.1 + 43469 0.69 0.548009
Target:  5'- -aCCGGCGCuCGAUgucacgCUCACCGUUgUACGg -3'
miRNA:   3'- gaGGUUGCG-GCUG------GAGUGGCAG-AUGC- -5'
1457 3' -55.4 NC_001335.1 + 5810 0.69 0.537383
Target:  5'- cCUCaaCGugGCUGACgaCACCGUCUgGCGu -3'
miRNA:   3'- -GAG--GUugCGGCUGgaGUGGCAGA-UGC- -5'
1457 3' -55.4 NC_001335.1 + 5596 0.7 0.485459
Target:  5'- uCUCCGguGCGCCGGCCguagcggcaggCACCGUacGCa -3'
miRNA:   3'- -GAGGU--UGCGGCUGGa----------GUGGCAgaUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.