miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14570 3' -56.2 NC_003521.1 + 113492 0.66 0.962923
Target:  5'- -gAUCGugGcCGaCCGGcAGcCGCUGAc -3'
miRNA:   3'- agUAGCugCaGC-GGCC-UCuGCGACUu -5'
14570 3' -56.2 NC_003521.1 + 24344 0.66 0.960909
Target:  5'- -aAUCGGCGgcgggaccugaaggUGCUGGuGAUGCUGAu -3'
miRNA:   3'- agUAGCUGCa-------------GCGGCCuCUGCGACUu -5'
14570 3' -56.2 NC_003521.1 + 177328 0.66 0.959526
Target:  5'- uUUGUCGAUcagCGcCCGGuccaGGACGCUGGAg -3'
miRNA:   3'- -AGUAGCUGca-GC-GGCC----UCUGCGACUU- -5'
14570 3' -56.2 NC_003521.1 + 109236 0.66 0.959526
Target:  5'- aCAcCG-CGUCGuuGGAGACgaagguGCUGAc -3'
miRNA:   3'- aGUaGCuGCAGCggCCUCUG------CGACUu -5'
14570 3' -56.2 NC_003521.1 + 167538 0.66 0.959526
Target:  5'- --cUCGGCGUCcuGCCgcaGGcAGAUGCUGAu -3'
miRNA:   3'- aguAGCUGCAG--CGG---CC-UCUGCGACUu -5'
14570 3' -56.2 NC_003521.1 + 218083 0.66 0.959526
Target:  5'- aCAgcgaggCGGCGgCGCCGGuGACGaUGAGg -3'
miRNA:   3'- aGUa-----GCUGCaGCGGCCuCUGCgACUU- -5'
14570 3' -56.2 NC_003521.1 + 65287 0.66 0.959526
Target:  5'- aUCA-CGACa-UGCUGGGGGCGCUGu- -3'
miRNA:   3'- -AGUaGCUGcaGCGGCCUCUGCGACuu -5'
14570 3' -56.2 NC_003521.1 + 176298 0.66 0.958466
Target:  5'- gCGUCGGCGUCGUCGcgcaacauggccuuGAGGCGUc--- -3'
miRNA:   3'- aGUAGCUGCAGCGGC--------------CUCUGCGacuu -5'
14570 3' -56.2 NC_003521.1 + 118221 0.66 0.95592
Target:  5'- cCGcCGcCGUCGCCGGGGugGUc--- -3'
miRNA:   3'- aGUaGCuGCAGCGGCCUCugCGacuu -5'
14570 3' -56.2 NC_003521.1 + 148216 0.66 0.95592
Target:  5'- gCGUCGGCGUa--UGGAGAUGCaUGAc -3'
miRNA:   3'- aGUAGCUGCAgcgGCCUCUGCG-ACUu -5'
14570 3' -56.2 NC_003521.1 + 169862 0.66 0.952102
Target:  5'- cCGUCGGCGUggcucCGuCCGGAGcCGCUc-- -3'
miRNA:   3'- aGUAGCUGCA-----GC-GGCCUCuGCGAcuu -5'
14570 3' -56.2 NC_003521.1 + 234859 0.66 0.952102
Target:  5'- gCAUCGGCGUCGUguuCGGAugaGAUGCg--- -3'
miRNA:   3'- aGUAGCUGCAGCG---GCCU---CUGCGacuu -5'
14570 3' -56.2 NC_003521.1 + 119803 0.66 0.952102
Target:  5'- -gGUCGGCGcCGCCGaGGAgGuCUGGAg -3'
miRNA:   3'- agUAGCUGCaGCGGCcUCUgC-GACUU- -5'
14570 3' -56.2 NC_003521.1 + 46132 0.66 0.948068
Target:  5'- -aGUCGGcCG-CGaugaUGGAGACGCUGAc -3'
miRNA:   3'- agUAGCU-GCaGCg---GCCUCUGCGACUu -5'
14570 3' -56.2 NC_003521.1 + 11747 0.66 0.943816
Target:  5'- gUCAUCGACGggcccgacUCGCCcuGGGGACgGCUc-- -3'
miRNA:   3'- -AGUAGCUGC--------AGCGG--CCUCUG-CGAcuu -5'
14570 3' -56.2 NC_003521.1 + 161566 0.66 0.943816
Target:  5'- uUCuUCGAC-UCGCCGGAGaACGUg--- -3'
miRNA:   3'- -AGuAGCUGcAGCGGCCUC-UGCGacuu -5'
14570 3' -56.2 NC_003521.1 + 168491 0.67 0.939342
Target:  5'- aUCAUgGGCGgCGagaCGGAGGCGgaGGAc -3'
miRNA:   3'- -AGUAgCUGCaGCg--GCCUCUGCgaCUU- -5'
14570 3' -56.2 NC_003521.1 + 155051 0.67 0.939342
Target:  5'- uUCGUgGACG--GCUGcGAGGCGCUGGc -3'
miRNA:   3'- -AGUAgCUGCagCGGC-CUCUGCGACUu -5'
14570 3' -56.2 NC_003521.1 + 228358 0.67 0.934646
Target:  5'- -uGUCGAUGUCGuuGGccAGACGCc--- -3'
miRNA:   3'- agUAGCUGCAGCggCC--UCUGCGacuu -5'
14570 3' -56.2 NC_003521.1 + 129646 0.67 0.929725
Target:  5'- gUCcgCGGCGccgUCGCCGGGGcggccGCGCUa-- -3'
miRNA:   3'- -AGuaGCUGC---AGCGGCCUC-----UGCGAcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.