miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14570 5' -58.3 NC_003521.1 + 181463 0.66 0.909088
Target:  5'- -gUCCAGCGg--CUgGCGCG-CCGCCUg -3'
miRNA:   3'- cuGGGUCGCagaGA-CGUGCaGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 34362 0.66 0.909088
Target:  5'- aGGCCCAG-GUC-CUGgGCGUUgcgCACCa -3'
miRNA:   3'- -CUGGGUCgCAGaGACgUGCAG---GUGGa -5'
14570 5' -58.3 NC_003521.1 + 162879 0.66 0.909088
Target:  5'- aGACCCAGCagggCUuCAUGUCCAUCg -3'
miRNA:   3'- -CUGGGUCGcagaGAcGUGCAGGUGGa -5'
14570 5' -58.3 NC_003521.1 + 49813 0.66 0.909088
Target:  5'- aGGCCUGGaugaGg--CUGCccACGUCCACCUg -3'
miRNA:   3'- -CUGGGUCg---CagaGACG--UGCAGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 233350 0.66 0.909088
Target:  5'- aACCCGGCGagC-CUGCugGaUCCGCg- -3'
miRNA:   3'- cUGGGUCGCa-GaGACGugC-AGGUGga -5'
14570 5' -58.3 NC_003521.1 + 112366 0.66 0.909088
Target:  5'- cACgCGGCGg--CUGCGgcgucuCGUCCACCUg -3'
miRNA:   3'- cUGgGUCGCagaGACGU------GCAGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 112757 0.66 0.909088
Target:  5'- aGCCCAuggGCGgcaUCggcgGCGCGUCgGCCa -3'
miRNA:   3'- cUGGGU---CGCag-AGa---CGUGCAGgUGGa -5'
14570 5' -58.3 NC_003521.1 + 204101 0.66 0.909088
Target:  5'- cACCUgguGGCGcCaCUGCGCcUCCACCUg -3'
miRNA:   3'- cUGGG---UCGCaGaGACGUGcAGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 59104 0.66 0.909088
Target:  5'- --gCCAGCGUg-C-GCGCGUCCAUCa -3'
miRNA:   3'- cugGGUCGCAgaGaCGUGCAGGUGGa -5'
14570 5' -58.3 NC_003521.1 + 168587 0.66 0.899489
Target:  5'- uGACCCAGCGgCggcauggacaugggCUGCuggGCGUgCGCCa -3'
miRNA:   3'- -CUGGGUCGCaGa-------------GACG---UGCAgGUGGa -5'
14570 5' -58.3 NC_003521.1 + 99095 0.66 0.897004
Target:  5'- aGCCCGGCGUCg--GUcaaggagauaGCGUCCAgCa -3'
miRNA:   3'- cUGGGUCGCAGagaCG----------UGCAGGUgGa -5'
14570 5' -58.3 NC_003521.1 + 174794 0.66 0.897004
Target:  5'- uGCCCAGCaUUUCUGUcaGCGcCCACa- -3'
miRNA:   3'- cUGGGUCGcAGAGACG--UGCaGGUGga -5'
14570 5' -58.3 NC_003521.1 + 80126 0.66 0.897004
Target:  5'- cGCCCuuGUGUUUuugcggccggugCUGCGCGUCCAgCCg -3'
miRNA:   3'- cUGGGu-CGCAGA------------GACGUGCAGGU-GGa -5'
14570 5' -58.3 NC_003521.1 + 33065 0.66 0.895118
Target:  5'- cGCCCAGCGggUCcaugaagauggccuUCUGCACGggcUCCAgCCa -3'
miRNA:   3'- cUGGGUCGC--AG--------------AGACGUGC---AGGU-GGa -5'
14570 5' -58.3 NC_003521.1 + 221139 0.66 0.893212
Target:  5'- cGGCCUGGCcugucagauuccucgGUCUCUG-GCG-CCACCUg -3'
miRNA:   3'- -CUGGGUCG---------------CAGAGACgUGCaGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 103314 0.66 0.890641
Target:  5'- gGACgCGGCG---CUGCACGUCCcagACCUc -3'
miRNA:   3'- -CUGgGUCGCagaGACGUGCAGG---UGGA- -5'
14570 5' -58.3 NC_003521.1 + 121247 0.66 0.890641
Target:  5'- cGCCCAGCGUgUucCUGCACuUCuCACUc -3'
miRNA:   3'- cUGGGUCGCAgA--GACGUGcAG-GUGGa -5'
14570 5' -58.3 NC_003521.1 + 46086 0.66 0.877291
Target:  5'- cGCCCGGCGUCgcagaccUUGUAgCG-CCGCCUc -3'
miRNA:   3'- cUGGGUCGCAGa------GACGU-GCaGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 131667 0.66 0.877291
Target:  5'- cGCUgGGCGUCUaccgcCUGCACGUCaaCAUCg -3'
miRNA:   3'- cUGGgUCGCAGA-----GACGUGCAG--GUGGa -5'
14570 5' -58.3 NC_003521.1 + 66675 0.66 0.877291
Target:  5'- aGGCCCuggAGCGUCacgugCUGUcgGCGUUgACCUa -3'
miRNA:   3'- -CUGGG---UCGCAGa----GACG--UGCAGgUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.